Schema for estOrientInfo
  Database: fr1    Primary Table: estOrientInfo    Row Count: 344,581   Data last updated: 2019-03-08
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 586smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chrUnvarchar(255) values Reference sequence chromosome or scaffold
chromStart 228608int(10) unsigned range Start position in chromosome
chromEnd 229146int(10) unsigned range End position in chromosome
name AL839945varchar(255) values Accession of EST
intronOrientation 1smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        fr1.all_est.qName (via estOrientInfo.name)
      fr1.est.qName (via estOrientInfo.name)
      fr1.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
586chrUn228608229146AL83994510000
588chrUn422683422826AL83546500000
589chrUn602597603569AL83703330000
591chrUn793055793153AL84240400000
591chrUn831688833113AL83689340000
591chrUn831689833068AL83534740000
591chrUn831696833095AL84232140070
591chrUn832115833113AL83630220000
591chrUn845655845995AL83792400000
591chrUn850255850686AL83908010200

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.