Schema for xenoMrna
  Database: fr2    Primary Table: xenoMrna    Row Count: 6,185,972   Data last updated: 2020-08-21
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 104int(10) unsigned Number of bases that match that aren't repeats
misMatches 24int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 0int(10) unsigned Number of inserts in target
tBaseInsert 0int(10) unsigned Number of bases inserted in target
strand ++char(2) + or - for strand. First character query, second target (optional)
qName JW549738varchar(255) Query sequence name
qSize 277int(10) unsigned Query sequence size
qStart 149int(10) unsigned Alignment start position in query
qEnd 277int(10) unsigned Alignment end position in query
tName chrMvarchar(255) Target sequence name
tSize 16447int(10) unsigned Target sequence size
tStart 0int(10) unsigned Alignment start position in target
tEnd 128int(10) unsigned Alignment end position in target
blockCount 1int(10) unsigned Number of blocks in alignment
blockSizes 128,longblob Size of each block
qStarts 149,longblob Start of each block in query.
tStarts 0,longblob Start of each block in target.

Connected Tables and Joining Fields
        fr2.all_est.qName (via xenoMrna.qName)
      fr2.all_mrna.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58510424000000++JW549738277149277chrM1644701281128,149,0,
58552510004231285129++EZ905468904103898chrM1644707966188,209,49,86,107,28,103,298,569,677,763,870,0,197,468,573,660,768,
58571111200699699++JO6856869771923chrM1644709227140,20,173,59,62,250,119,1,171,198,391,463,546,804,0,169,197,394,465,546,803,
5854181130063786375++AK154943448627583667chrM1644716922730,126,14,51,242,32,36,2758,2974,3174,3203,3300,3579,3631,16,236,438,466,559,834,886,
58542711140042483958434021+-JW4628829501219432chrM1644765953951844,291,4,20,11,5,501,42,1440,142,49,6,57,138,8,9,184,39,135,51,10,60,54,145,27,217,17,8,30,16,12,4,5,12,116,80,31,60,120,47,34, ...21,957,1675,1680,1705,1717,1733,2509,2669,5317,5538,5587,5599,5732,5905,5917,5951,6246,6500,6693,6753,6830,6904,6959,7190,7276,7 ...6908,7844,8562,8566,8593,8604,8623,9408,9579,12237,12458,12512,12518,12654,12829,12839,12873,13168,13422,13618,13676,13751,13820 ...
5851102200170168+-JT3154002773205chrM1644766266269,63,3,142,16181,16318,
585303710062776254++KA1912817110651chrM1644769697769,65,33,20,67,93,27,0,150,244,288,407,526,624,69,215,307,350,459,573,670,
5854027302241405139++FX1133106381638chrM1644769705669,9,257,21,10,131,1,111,128,418,439,507,69,178,197,485,507,574,
5855068902041134115++JL5959847360728chrM16447697995121,173,10,58,253,0,127,336,395,475,69,197,409,468,546,
585618102042586488++JL4830238502850chrM16447699196121,200,10,58,253,120,2,129,337,396,476,730,69,197,409,468,546,799,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.