Schema for xenoMrna
  Database: fr3    Primary Table: xenoMrna    Row Count: 5,021,283   Data last updated: 2020-08-19
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 78int(10) unsigned Number of bases that match that aren't repeats
misMatches 41int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 19int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 0int(10) unsigned Number of inserts in target
tBaseInsert 0int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName JW581129varchar(255) Query sequence name
qSize 445int(10) unsigned Query sequence size
qStart 127int(10) unsigned Alignment start position in query
qEnd 265int(10) unsigned Alignment end position in query
tName HE591497varchar(255) Target sequence name
tSize 1070096int(10) unsigned Target sequence size
tStart 11289int(10) unsigned Alignment start position in target
tEnd 11427int(10) unsigned Alignment end position in target
blockCount 1int(10) unsigned Number of blocks in alignment
blockSizes 138,longblob Size of each block
qStarts 127,longblob Start of each block in query.
tStarts 1058669,longblob Start of each block in target.

Connected Tables and Joining Fields
        fr3.all_est.qName (via xenoMrna.qName)
      fr3.all_mrna.qName (via xenoMrna.qName)
      fr3.refGene.name (via xenoMrna.qName)
      fr3.refSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58578410190000+-JW581129445127265HE591497107009611289114271138,127,1058669,
58574420190000+-JT425753468323458HE591497107009611337114721135,323,1058624,
5858346000000+-JW637716611385514HE591497107009613294134231129,385,1056673,
585121946604292771464405++AJ7210562479322036HE591497107009614726808581636,162,105,60,54,33,90,189,111,155,88,104,13,195,36,296,32,195,357,469,575,633,667,757,946,1064,1219,1322,1426,1439,1643,1740,14726,73746,74255,74366,74565,74622,74655,75515,75814,76076,76504,76684,79276,79963,80237,80562,
5853298002015852132++JT342358197011781665HE59149710700964056243123615,85,7,194,56,72,1178,1251,1336,1343,1537,1593,40562,40782,41705,42047,42783,43051,
58526095020218443055++JW86743519098381397HE59149710700964056243992515,87,5,196,72,838,911,998,1003,1325,40562,40782,41494,42047,43920,
585651153060267109262++JW580233298410972028HE591497107009640562506881115,87,5,194,56,72,79,131,104,48,73,1097,1170,1257,1262,1456,1512,1593,1672,1803,1907,1955,40562,40782,41494,42047,42783,43051,43929,44086,46493,49707,50615,
585651153060267109262++JW58023520291421073HE591497107009640562506881115,87,5,194,56,72,79,131,104,48,73,142,215,302,307,501,557,638,717,848,952,1000,40562,40782,41494,42047,42783,43051,43929,44086,46493,49707,50615,
5852108004225621710++KA45454516256831071HE59149710700964077042812368,204,60,683,753,1011,40770,42012,42752,
585472137060213769233+-JP74587221097971603HE59149710700964077950681765,105,127,85,192,6,89,797,862,967,1097,1316,1508,1514,1019415,1023498,1025879,1026087,1027857,1028271,1029228,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.