Schema for ensGene
  Database: gadMor1    Primary Table: ensGene    Row Count: 82,946   Data last updated: 2019-01-14
Format description: A gene prediction with some additional info.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
name ENSGMOT00000009508.1varchar(255) values Name of gene (usually transcript_id from GTF)
chrom CAEA01000002varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 512int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 761int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 512int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 761int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 1int(10) unsigned range Number of exons
exonStarts 512,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 761,longblob   Exon end positions (or start positions for minus strand item)
score 0int(11) range score
name2 ENSGMOG00000008629.1varchar(255) values Alternate name (e.g. gene_id from GTF)
cdsStartStat cmplenum('none', 'unk', 'incmpl', 'cmpl') values Status of CDS start annotation (none, unknown, incomplete, or complete)
cdsEndStat cmplenum('none', 'unk', 'incmpl', 'cmpl') values Status of CDS end annotation (none, unknown, incomplete, or complete)
exonFrames 1,longblob   Reading frame of the start of the CDS region of the exon, in the direction of transcription (0,1,2), or -1 if there is no CDS region.

Connected Tables and Joining Fields
        gadMor1.ensGtp.transcript (via ensGene.name)
      gadMor1.ensPep.name (via ensGene.name)
      gadMor1.ensemblSource.name (via ensGene.name)
      gadMor1.ensemblToGeneName.name (via ensGene.name)
      knownGeneV39.knownToEnsembl.value (via ensGene.name)

Sample Rows
 
binnamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEndsscorename2cdsStartStatcdsEndStatexonFrames
585ENSGMOT00000009508.1CAEA01000002-5127615127611512,761,0ENSGMOG00000008629.1cmplcmpl1,
585ENSGMOT00000011732.1CAEA01000004+195155319515534195,868,1159,1457,259,956,1290,1553,0ENSGMOG00000010621.1cmplincmpl2,0,1,0,
585ENSGMOT00000021476.1CAEA01000011+1188201188202118,682,301,820,0ENSGMOG00000019433.1cmplincmpl0,0,
585ENSGMOT00000021446.1CAEA01000018-102511841025118411025,1184,0ENSGMOG00000019457.1cmplcmpl1,
585ENSGMOT00000014852.1CAEA01000035+3574563574561357,456,0ENSGMOG00000013535.1incmplincmpl0,
585ENSGMOT00000011155.1CAEA01000036+3584303584301358,430,0ENSGMOG00000010132.1incmplincmpl0,
585ENSGMOT00000006216.1CAEA01000071+227724332277243312277,2433,0ENSGMOG00000005665.1incmplcmpl0,
585ENSGMOT00000008279.1CAEA01000088+107184310718435107,602,844,1381,1634,270,757,1054,1508,1843,0ENSGMOG00000007517.1incmplincmpl0,1,0,0,1,
585ENSGMOT00000015090.1CAEA01000117-27427412,74,0ENSGMOG00000013747.1incmplcmpl2,
585ENSGMOT00000004672.1CAEA01000152+877112887711281877,1128,0ENSGMOG00000004285.1cmplcmpl1,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.