Schema for xenoRefFlat
  Database: gadMor1    Primary Table: xenoRefFlat    Row Count: 656,045   Data last updated: 2020-08-19
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type description
geneName taar14lvarchar(255) Name of gene as it appears in genome browser.
name NM_001083103varchar(255) Name of gene
chrom HE572418varchar(255) Reference sequence chromosome or scaffold
strand +char(1) + or - for strand
txStart 643435int(10) unsigned Transcription start position (or end position for minus strand item)
txEnd 678846int(10) unsigned Transcription end position (or start position for minus strand item)
cdsStart 643435int(10) unsigned Coding region start (or end position for minus strand item)
cdsEnd 678846int(10) unsigned Coding region end (or start position for minus strand item)
exonCount 2int(10) unsigned Number of exons
exonStarts 643435,678789,longblob Exon start positions (or end positions for minus strand item)
exonEnds 643552,678846,longblob Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        gadMor1.xenoRefGene.name (via xenoRefFlat.name)
      gadMor1.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
taar14lNM_001083103HE572418+6434356788466434356788462643435,678789,643552,678846,
OCLNNM_001205254CAEA01100988+1682168221,457,151,682,
OCLNNM_001205254HE566922-2316812379572316812379574231681,236752,237363,237804,231765,236788,237486,237957,
si:dkey-157g16.6NM_001214908HE567345-1362395137972913657211379638181362395,1362498,1362627,1362910,1363077,1363864,1364156,1364323,1364542,1365492,1365606,1365719,1366138,1366903,1367030,1367326, ...1362466,1362585,1362645,1362990,1363091,1363880,1364173,1364420,1364627,1365504,1365621,1366111,1366567,1367012,1367317,1367347, ...
endogNM_001024214CAEA01243596-3312633126133,126,
SOX6NM_001131735CAEA01031650-847105484710542847,949,940,1054,
SOX6NM_001131735CAEA01048619-4913949139149,139,
SOX6NM_001131735HE566628+3786704470083786704437716378670,400262,440621,442671,443717,446984,378724,400430,440720,442884,443771,447008,
Dpagt1NM_001244041HE569363-238948923918812389489239188172389489,2389666,2390454,2390796,2391021,2391351,2391761,2389546,2389819,2390643,2390877,2391170,2391565,2391881,
RECKNM_001192465CAEA01259376+2253542253541225,354,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.