Schema for mrnaOrientInfo
  Database: galGal2    Primary Table: mrnaOrientInfo    Row Count: 42,613   Data last updated: 2020-08-21
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 21946int(10) unsigned range Start position in chromosome
chromEnd 22999int(10) unsigned range End position in chromosome
name CR354117varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 17smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        galGal2.all_mrna.qName (via mrnaOrientInfo.name)
      galGal2.refFlat.name (via mrnaOrientInfo.name)
      galGal2.refGene.name (via mrnaOrientInfo.name)
      galGal2.refSeqAli.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585chr12194622999CR354117000170
585chr13527036068BX93246400000
585chr13527036068BX93250700000
585chr13711844077BX93071540000
585chr13711844100BX93192740000
585chr19705097779CR38605500000
585chr198207109766BX929968100000
585chr198214108777CR39082250000
586chr1139787156094AF143806484000
586chr1139787156094AY77209140000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.