Schema for xenoRefGene
  Database: galGal2    Primary Table: xenoRefGene    Row Count: 438,401   Data last updated: 2020-08-21
Format description: A gene prediction.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name NR_102300varchar(255) values Name of gene
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 56579955int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 56580627int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 56580627int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 56580627int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 1int(10) unsigned range Number of exons
exonStarts 56579955,longblob   Exon start positions (or end positions for minus strand item)
exonEnds 56580627,longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        galGal2.all_est.qName (via xenoRefGene.name)
      galGal2.all_mrna.qName (via xenoRefGene.name)
      galGal2.refGene.name (via xenoRefGene.name)
      galGal2.refSeqAli.qName (via xenoRefGene.name)
      galGal2.xenoMrna.qName (via xenoRefGene.name)
      galGal2.xenoRefFlat.name (via xenoRefGene.name)
      galGal2.xenoRefSeqAli.qName (via xenoRefGene.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefGene.name)
      hgFixed.gbMiscDiff.acc (via xenoRefGene.name)
      hgFixed.gbSeq.acc (via xenoRefGene.name)
      hgFixed.gbWarn.acc (via xenoRefGene.name)
      hgFixed.imageClone.acc (via xenoRefGene.name)

Sample Rows
 
namechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
NR_102300chr1+56579955565806275658062756580627156579955,56580627,
NM_001012455chrUn+1636129541636455211636129541636455213163612954,163645065,163645389,163612993,163645176,163645521,
NM_001083735chr4+204493302048664320449378204825351620449330,20451541,20457280,20458098,20461385,20469529,20470908,20476862,20478206,20481252,20482382,20483124,20486228,20486301,20 ...20449512,20451779,20457430,20458281,20462112,20469630,20471077,20477028,20478277,20481393,20482544,20483137,20486281,20486323,20 ...
NM_146755chr1+1880632681880638491880632681880638492188063268,188063453,188063325,188063849,
NM_001165105chr2-1207941451207945371207941451207945372120794145,120794453,120794223,120794537,
NM_001165231chr1-1064135291064139401064135291064139403106413529,106413724,106413862,106413637,106413784,106413940,
NM_001172370chr6+10308154103271441030815410327144510308154,10308182,10321269,10326302,10327105,10308173,10308268,10321314,10326326,10327144,
NM_001081974chr5+472348284725278647234831472484801947234828,47236687,47238705,47238817,47240673,47241412,47242109,47242879,47243195,47243997,47244136,47245613,47248318,47252197,47 ...47235092,47236917,47238785,47238819,47240898,47241499,47242211,47243053,47243295,47244047,47244204,47245722,47248480,47252213,47 ...
NM_001081975chr10+20675791206770042067580020677004520675791,20675991,20676154,20676387,20676815,20675883,20676064,20676207,20676517,20677004,
NM_001081977chr3+93327382933563469332739493351971893327382,93343341,93343646,93344726,93346035,93347539,93351839,93356307,93327529,93343446,93343707,93344931,93346186,93347629,93351971,93356346,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.