Schema for estOrientInfo
  Database: galGal3    Primary Table: estOrientInfo    Row Count: 618,967   Data last updated: 2020-05-08
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 870smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr1varchar(255) Reference sequence chromosome or scaffold
chromStart 37380327int(10) unsigned Start position in chromosome
chromEnd 37383866int(10) unsigned End position in chromosome
name AA495708varchar(255) Accession of EST
intronOrientation 3smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 0smallint(6) Number of trailing A's on reverse strand
signalPos 0smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        galGal3.all_est.qName (via estOrientInfo.name)
      galGal3.est.qName (via estOrientInfo.name)
      galGal3.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
870chr13738032737383866AA49570830000
1199chr18051256780512942AA49570110000
1552chr1126774006126775078AA49571910000
742chr112070673920707304AA49571520000
589chr19645459646516AA49569631000
698chr21493381114935164AA49569910000
667chr201084817610850674AA49570430000
626chr2354877655489194AA49570020000
608chr2630694483077222AA49571450000
610chr2733125723314740AA49571830000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.