Schema for xenoRefFlat
  Database: gorGor6    Primary Table: xenoRefFlat    Row Count: 329,551   Data last updated: 2020-05-06
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName CCNL2varchar(255) values Name of gene as it appears in genome browser.
name NM_001350497varchar(255) values Name of gene
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 1534int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 13381int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 2627int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 5940int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 10int(10) unsigned range Number of exons
exonStarts 1534,3173,3350,5310,5539,58...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 2979,3266,3462,5452,5644,59...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        gorGor6.xenoRefGene.name (via xenoRefFlat.name)
      gorGor6.xenoRefSeqAli.qName (via xenoRefFlat.name)
      hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
CCNL2NM_001350497chr1-15341338126275940101534,3173,3350,5310,5539,5847,7746,8463,10442,13271,2979,3266,3462,5452,5644,5947,7871,8528,10586,13381,
CCNL2NM_001320153chr1-15341436726275940131534,3173,3350,5310,5539,5847,7857,8463,10442,13271,13636,14058,14340,2979,3266,3462,5452,5644,6658,7871,8528,10563,13381,13711,14282,14367,
CCNL2NM_001320155chr1-15341436726275940131534,3173,3350,5310,5539,5847,7857,8463,10442,13271,13636,14058,14340,2979,3266,3462,5452,5644,5947,7871,8528,10563,13381,13711,14282,14367,
CCNL2NM_001350498chr1-15341436726275940131534,3173,3350,5310,5539,5847,7746,8463,10442,13271,13636,14058,14340,2979,3266,3462,5452,5644,5947,7871,8528,10563,13381,13711,14282,14367,
CCNL2NM_001350499chr1-15341436726276645141534,3173,3350,5310,5539,5847,6379,7746,8463,10442,13271,13636,14058,14340,2979,3266,3462,5452,5644,5947,6658,7871,8528,10563,13381,13711,14282,14367,
CCNL2NM_001350500chr1-15341436726276645141534,3173,3350,5310,5539,5847,6379,7857,8463,10442,13271,13636,14058,14340,2979,3266,3462,5452,5644,5947,6658,7871,8528,10563,13381,13711,14282,14367,
CCNL2NM_030937chr1-153414367262714282121534,3173,3350,5310,5539,5847,8463,10442,13271,13636,14058,14340,2979,3266,3462,5452,5644,5947,8528,10563,13381,13711,14282,14367,
CCNL2NR_135154chr1-1534143671436714367121534,3173,3350,5302,5539,5847,8463,10442,13271,13636,14058,14340,2979,3266,3464,5452,5644,7871,8528,10563,13381,13711,14282,14367,
CCNL2NR_146722chr1-1534143671436714367141534,3173,3350,5309,5539,5847,6379,7746,8463,10442,13271,13636,14058,14340,2979,3266,3464,5452,5644,5947,6658,7871,8528,10563,13381,13711,14282,14367,
CCNL2NR_146723chr1-1534143671436714367131534,3173,3350,5309,5539,5847,7746,8463,10442,13271,13636,14058,14340,2979,3266,3464,5452,5644,6658,7871,8528,10563,13381,13711,14282,14367,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.