Schema for all_mrna
  Database: hetGla1    Primary Table: all_mrna    Row Count: 181   Data last updated: 2019-03-13
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 586smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 650int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 46int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 5int(10) unsigned range Number of inserts in target
tBaseInsert 9741int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName AB539798varchar(255) values Query sequence name
qSize 696int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 696int(10) unsigned range Alignment end position in query
tName JH165526varchar(255) values Target sequence name
tSize 488459int(10) unsigned range Target sequence size
tStart 184914int(10) unsigned range Alignment start position in target
tEnd 195351int(10) unsigned range Alignment end position in target
blockCount 6int(10) unsigned range Number of blocks in alignment
blockSizes 13,254,137,122,118,52,longblob   Size of each block
qStarts 0,13,267,404,526,644,longblob   Start of each block in query.
tStarts 184914,186845,192009,193853...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hetGla1.mrnaOrientInfo.name (via all_mrna.qName)
      hetGla1.xenoMrna.qName (via all_mrna.qName)
      hetGla1.xenoRefGene.name (via all_mrna.qName)
      hetGla1.xenoRefSeqAli.qName (via all_mrna.qName)
      hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58665004600059741+AB5397986960696JH165526488459184914195351613,254,137,122,118,52,0,13,267,404,526,644,184914,186845,192009,193853,195020,195299,
597174310312437101-KM486699174901749JH1656282030303160198116408296274,1077,29,30,129,208,0,276,1353,1382,1412,1541,1601981,1602255,1607040,1618498,1619037,1640621,
588165600000610580-KM4867321722621718JH1656366049764697904820267797,124,118,174,174,118,151,4,801,925,1043,1217,1391,1509,469790,471007,476305,477616,478967,480054,481875,
5871434300001112517+HQ32666515931481585JH16575010254843685253824791274,45,55,120,98,55,74,59,121,131,68,537,148,222,267,322,442,540,595,669,728,849,980,1048,368525,371538,375681,375819,377552,380457,380636,380820,380971,381266,381628,381942,
7572100000491835-AB5397997210721JH165765316269123324842425040574,137,254,188,68,0,74,211,465,653,2332484,2395501,2416964,2420833,2424972,
58759532300038216+AB5398006210621JH1657666099522692722781094179,120,168,154,0,179,299,467,269272,272308,274277,277955,
7449592000015176213-KM4867395007465007JH165770132285310827941263968163228,147,87,223,152,125,59,75,189,100,103,118,64,127,94,70,0,3228,3375,3462,3685,3837,3962,4021,4096,4285,4385,4488,4606,4670,4797,4891,1082794,1117391,1120190,1129660,1130694,1135066,1140214,1142300,1149556,1166716,1170538,1183501,1187279,1219847,1249233,1263898,
599454515090001928206-HQ326686505615056JH165776455909219185781951839203,2927,141,222,82,59,68,64,86,120,158,140,99,114,106,150,208,199,59,50,0,3,2930,3071,3293,3375,3434,3502,3566,3652,3772,3930,4070,4169,4283,4389,4539,4747,4946,5005,1918578,1918582,1922474,1924240,1925995,1926390,1928219,1929735,1930314,1931482,1932741,1936678,1937419,1938051,1941149,1941463, ...
60989900000416551+HQ3266379070899JH165776455909232146783232128565,138,122,89,485,0,65,203,325,414,3214678,3218176,3224989,3228572,3231643,
5863363103473012485443-HQ32665846366244611JH16579121301720863521301717223,152,48,492,8,17,126,10,321,247,256,207,136,114,628,182,772,25,250,412,462,956,964,985,1112,1133,1465,1713,1971,2178,2315,2430,3058,3240,208635,208858,209011,209059,209551,209561,209578,209704,209714,210035,210282,210538,210749,210885,210999,211708,212245,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.