Schema for humanHprdP2P
  Database: hg17    Primary Table: humanHprdP2P    Row Count: 2,787,049   Data last updated: 2006-11-06
Format description: Abstract distance between two genes
On download server: MariaDB table dump directory
fieldexampleSQL type description
query NM_002394varchar(255) Query gene. Indexed
target NM_002394varchar(255) Target gene. Not indexed
distance 0float Distance between two, possibly in some expression space

Connected Tables and Joining Fields
        hg17.bioCycPathway.kgID (via humanHprdP2P.query)
      hg17.ccdsKgMap.geneId (via humanHprdP2P.query)
      hg17.ceBlastTab.query (via humanHprdP2P.query)
      hg17.dmBlastTab.query (via humanHprdP2P.query)
      hg17.drBlastTab.query (via humanHprdP2P.query)
      hg17.dupSpMrna.mrnaID (via humanHprdP2P.query)
      hg17.foldUtr3.name (via humanHprdP2P.query)
      hg17.foldUtr5.name (via humanHprdP2P.query)
      hg17.gladHumESDistance.query (via humanHprdP2P.query)
      hg17.gladHumESDistance.target (via humanHprdP2P.query)
      hg17.gnfAtlas2Distance.query (via humanHprdP2P.query)
      hg17.gnfAtlas2Distance.target (via humanHprdP2P.query)
      hg17.gnfU95Distance.query (via humanHprdP2P.query)
      hg17.gnfU95Distance.target (via humanHprdP2P.query)
      hg17.humanVidalP2P.query (via humanHprdP2P.query)
      hg17.humanVidalP2P.target (via humanHprdP2P.query)
      hg17.humanWankerP2P.query (via humanHprdP2P.query)
      hg17.humanWankerP2P.target (via humanHprdP2P.query)
      hg17.keggPathway.kgID (via humanHprdP2P.query)
      hg17.kgAlias.kgID (via humanHprdP2P.query)
      hg17.kgProtAlias.kgID (via humanHprdP2P.query)
      hg17.kgSpAlias.kgID (via humanHprdP2P.query)
      hg17.kgTargetAli.qName (via humanHprdP2P.query)
      hg17.kgXref.kgID (via humanHprdP2P.query)
      hg17.knownBlastTab.query (via humanHprdP2P.query)
      hg17.knownBlastTab.target (via humanHprdP2P.query)
      hg17.knownCanonical.transcript (via humanHprdP2P.query)
      hg17.knownExpDistance.query (via humanHprdP2P.query)
      hg17.knownExpDistance.target (via humanHprdP2P.query)
      hg17.knownGene.name (via humanHprdP2P.query)
      hg17.knownGeneLink.name (via humanHprdP2P.query)
      hg17.knownGeneMrna.name (via humanHprdP2P.query)
      hg17.knownGenePep.name (via humanHprdP2P.query)
      hg17.knownIsoforms.transcript (via humanHprdP2P.query)
      hg17.knownToAllenBrain.name (via humanHprdP2P.query)
      hg17.knownToEnsembl.name (via humanHprdP2P.query)
      hg17.knownToGnf1h.name (via humanHprdP2P.query)
      hg17.knownToGnfAtlas2.name (via humanHprdP2P.query)
      hg17.knownToHInv.name (via humanHprdP2P.query)
      hg17.knownToHprd.name (via humanHprdP2P.query)
      hg17.knownToKeggEntrez.name (via humanHprdP2P.query)
      hg17.knownToLocusLink.name (via humanHprdP2P.query)
      hg17.knownToPfam.name (via humanHprdP2P.query)
      hg17.knownToRefSeq.name (via humanHprdP2P.query)
      hg17.knownToSuper.gene (via humanHprdP2P.query)
      hg17.knownToU133.name (via humanHprdP2P.query)
      hg17.knownToU133Plus2.name (via humanHprdP2P.query)
      hg17.knownToU95.name (via humanHprdP2P.query)
      hg17.knownToVisiGene.name (via humanHprdP2P.query)
      hg17.mmBlastTab.query (via humanHprdP2P.query)
      hg17.rankProp.query (via humanHprdP2P.query)
      hg17.rankProp.target (via humanHprdP2P.query)
      hg17.rnBlastTab.query (via humanHprdP2P.query)
      hg17.scBlastTab.query (via humanHprdP2P.query)
      knownGeneV39.bioCycPathway.kgID (via humanHprdP2P.query)
      knownGeneV39.ceBlastTab.query (via humanHprdP2P.query)
      knownGeneV39.dmBlastTab.query (via humanHprdP2P.query)
      knownGeneV39.drBlastTab.query (via humanHprdP2P.query)
      knownGeneV39.foldUtr3.name (via humanHprdP2P.query)
      knownGeneV39.foldUtr5.name (via humanHprdP2P.query)
      knownGeneV39.gnfAtlas2Distance.query (via humanHprdP2P.query)
      knownGeneV39.gnfAtlas2Distance.target (via humanHprdP2P.query)
      knownGeneV39.kgAlias.kgID (via humanHprdP2P.query)
      knownGeneV39.kgColor.kgID (via humanHprdP2P.query)
      knownGeneV39.kgProtAlias.kgID (via humanHprdP2P.query)
      knownGeneV39.kgSpAlias.kgID (via humanHprdP2P.query)
      knownGeneV39.kgTargetAli.qName (via humanHprdP2P.query)
      knownGeneV39.kgXref.kgID (via humanHprdP2P.query)
      knownGeneV39.knownAttrs.kgID (via humanHprdP2P.query)
      knownGeneV39.knownBlastTab.query (via humanHprdP2P.query)
      knownGeneV39.knownBlastTab.target (via humanHprdP2P.query)
      knownGeneV39.knownCanonical.protein (via humanHprdP2P.query)
      knownGeneV39.knownCanonical.transcript (via humanHprdP2P.query)
      knownGeneV39.knownCds.name (via humanHprdP2P.query)
      knownGeneV39.knownGene.name (via humanHprdP2P.query)
      knownGeneV39.knownGeneMrna.name (via humanHprdP2P.query)
      knownGeneV39.knownGenePep.name (via humanHprdP2P.query)
      knownGeneV39.knownIsoforms.transcript (via humanHprdP2P.query)
      knownGeneV39.knownToEnsembl.name (via humanHprdP2P.query)
      knownGeneV39.knownToGnfAtlas2.name (via humanHprdP2P.query)
      knownGeneV39.knownToHprd.name (via humanHprdP2P.query)
      knownGeneV39.knownToLocusLink.name (via humanHprdP2P.query)
      knownGeneV39.knownToMrna.name (via humanHprdP2P.query)
      knownGeneV39.knownToMrnaSingle.name (via humanHprdP2P.query)
      knownGeneV39.knownToMupit.name (via humanHprdP2P.query)
      knownGeneV39.knownToPfam.name (via humanHprdP2P.query)
      knownGeneV39.knownToRefSeq.name (via humanHprdP2P.query)
      knownGeneV39.knownToSuper.gene (via humanHprdP2P.query)
      knownGeneV39.knownToTag.name (via humanHprdP2P.query)
      knownGeneV39.knownToU133.name (via humanHprdP2P.query)
      knownGeneV39.knownToU95.name (via humanHprdP2P.query)
      knownGeneV39.knownToVisiGene.name (via humanHprdP2P.query)
      knownGeneV39.knownToWikipedia.name (via humanHprdP2P.query)
      knownGeneV39.mmBlastTab.query (via humanHprdP2P.query)
      knownGeneV39.rnBlastTab.query (via humanHprdP2P.query)
      knownGeneV39.scBlastTab.query (via humanHprdP2P.query)
      knownGeneV39.ucscScop.ucscId (via humanHprdP2P.query)
      hg17.knownToHprd.name (via humanHprdP2P.target)
      knownGeneV39.humanHprdP2P.target (via humanHprdP2P.target)
      knownGeneV39.knownToHprd.name (via humanHprdP2P.target)

Sample Rows
 
querytargetdistance
NM_002394NM_0023940
NM_002394NM_0010126640
NM_002394NM_0010126630
NM_002394NM_0010126620
NM_002394NM_0010126610
NM_001012664NM_0023940
NM_001012664NM_0010126640
NM_001012664NM_0010126630
NM_001012664NM_0010126620
NM_001012664NM_0010126610

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.