Schema for intronEst
  Database: hg17    Primary Table: intronEst (chr1_intronEst)    Row Count: 393,452   Data last updated: 2016-05-06
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 468int(10) unsigned range Number of bases that match that aren't repeats
misMatches 10int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 1int(10) unsigned range Number of 'N' bases
qNumInsert 2int(10) unsigned range Number of inserts in query
qBaseInsert 89int(10) unsigned range Number of bases inserted in query
tNumInsert 3int(10) unsigned range Number of inserts in target
tBaseInsert 158int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName AA853941varchar(255) values Query sequence name
qSize 605int(10) unsigned range Query sequence size
qStart 1int(10) unsigned range Alignment start position in query
qEnd 569int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 245522847int(10) unsigned range Target sequence size
tStart 4266int(10) unsigned range Alignment start position in target
tEnd 4903int(10) unsigned range Alignment end position in target
blockCount 5int(10) unsigned range Number of blocks in alignment
blockSizes 52,55,16,285,71,longblob   Size of each block
qStarts 1,58,197,213,498,longblob   Start of each block in query.
tStarts 4266,4318,4390,4407,4832,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hg17.all_est.qName (via intronEst.qName)
      hg17.altGraphX.mrnaRefs (via intronEst.qName)
      hg17.est.qName (via intronEst.qName)
      hg17.estOrientInfo.name (via intronEst.qName)
      hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58546810012893158+AA8539416051569chr124552284742664903552,55,16,285,71,1,58,197,213,498,4266,4318,4390,4407,4832,
585324700004899-AA5525813376337chr1245522847451757475129,45,69,50,38,0,129,174,243,293,4517,4647,4832,5658,5709,
5854124000021199+AA9345834226422chr1245522847630479193188,86,142,6,194,280,6304,7519,7777,
5853751370004267-AA2784124130413chr1245522847648171615150,52,11,134,66,0,150,202,213,347,6481,6719,6772,6784,7095,
58544582500057629-AA4341494813481chr1245522847655914666642,92,32,147,99,66,0,42,134,166,313,412,6559,7480,7573,7777,8130,14600,
5859104000394-AA29182695095chr124552284766086797420,53,13,9,0,20,73,86,6608,6720,6774,6788,
585232230003288-AA4864502370237chr124552284766097134419,33,146,39,0,19,52,198,6609,6738,6772,7095,
5852832009194420-AA0840233429313chr124552284768507555114,4,11,10,9,9,10,4,12,125,87,29,34,39,57,69,79,90,101,107,121,246,6850,6854,6858,6873,6883,6892,6901,6911,7093,7106,7468,
5855074004118631-AA2927296226528chr124552284770938235119,14,22,82,102,31,20,127,35,53,16,94,103,123,145,227,332,363,384,511,547,600,7093,7104,7126,7149,7468,7574,7777,7797,8130,8165,8219,
585429300225617-AA4590814406440chr124552284771868235845,99,6,31,147,42,32,30,0,45,145,151,182,329,371,404,7186,7468,7567,7574,7777,8130,8173,8205,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.