Schema for xenoMrna
  Database: hg17    Primary Table: xenoMrna    Row Count: 5,833,024   Data last updated: 2020-08-21
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 442int(10) unsigned Number of bases that match that aren't repeats
misMatches 81int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 9int(10) unsigned Number of inserts in query
qBaseInsert 917int(10) unsigned Number of bases inserted in query
tNumInsert 10int(10) unsigned Number of inserts in target
tBaseInsert 1656int(10) unsigned Number of bases inserted in target
strand ++char(2) + or - for strand. First character query, second target (optional)
qName AK389184varchar(255) Query sequence name
qSize 1741int(10) unsigned Query sequence size
qStart 105int(10) unsigned Alignment start position in query
qEnd 1545int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 245522847int(10) unsigned Target sequence size
tStart 1887int(10) unsigned Alignment start position in target
tEnd 4066int(10) unsigned Alignment end position in target
blockCount 11int(10) unsigned Number of blocks in alignment
blockSizes 33,39,71,158,13,15,5,12,8,1...longblob Size of each block
qStarts 105,537,592,663,838,917,105...longblob Start of each block in query.
tStarts 1887,2513,2844,3083,3332,34...longblob Start of each block in target.

Connected Tables and Joining Fields
        hg17.all_est.qName (via xenoMrna.qName)
      hg17.all_mrna.qName (via xenoMrna.qName)
      hg17.altGraphX.mrnaRefs (via xenoMrna.qName)
      hg17.refGene.name (via xenoMrna.qName)
      hg17.refSeqAli.qName (via xenoMrna.qName)
      hg17.xenoEst.qName (via xenoMrna.qName)
      hg17.xenoRefFlat.name (via xenoMrna.qName)
      hg17.xenoRefGene.name (via xenoMrna.qName)
      hg17.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58544281009917101656++AK38918417411051545chr1245522847188740661133,39,71,158,13,15,5,12,8,12,157,105,537,592,663,838,917,1053,1059,1335,1348,1388,1887,2513,2844,3083,3332,3412,3563,3570,3844,3859,3909,
58583729300817351111552+-JT41694534171222987chr124552284720401472212123,147,141,132,132,30,108,54,81,57,77,48,122,356,503,644,782,932,1208,1334,1442,2775,2862,2939,245508125,245514923,245515242,245515620,245515935,245516079,245517080,245517963,245518193,245519931,245520297,245520759,
58512324001632727+-JW20246231147257chr124552284720422916348,53,46,47,158,211,245519931,245520321,245520759,
58595928200615591311433+-LE19002853811802980chr124552284720421471614116,115,144,141,132,138,32,109,72,18,99,44,12,69,180,296,411,555,696,834,979,1248,1357,1429,1482,2770,2814,2911,245508131,245514605,245514926,245515242,245515620,245515935,245516077,245517080,245517946,245518158,245518190,245519931,24552007 ...
5854983000000+-LE1215015010501chr1245522847214426451501,0,245520202,
585328600051796703+-JU289765890279846chr124552284724663557739,11,13,8,157,55,105,279,341,466,488,516,673,741,245519290,245519351,245519482,245519505,245519607,245519932,245520276,
5854098000011++LE1215034170417chr1245522847260330212375,42,0,375,2603,2979,
5854713000000++LA74150529489149chr124552284728692929160,89,2869,
585468410031200++JV4967725265526chr124552284736614170411,130,258,110,5,25,156,416,3661,3672,3802,4060,
58534124002300++JV5731473680368chr124552284737384103364,258,43,0,65,325,3738,3802,4060,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.