Schema for affyU133Plus2
  Database: hg18    Primary Table: affyU133Plus2    Row Count: 56,394   Data last updated: 2006-02-12
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 821smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 3766int(10) unsigned range Number of bases that match that aren't repeats
misMatches 7int(10) unsigned range Number of bases that don't match
repMatches 163int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 2int(10) unsigned range Number of inserts in query
qBaseInsert 2int(10) unsigned range Number of bases inserted in query
tNumInsert 18int(10) unsigned range Number of inserts in target
tBaseInsert 7830int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName 1007_s_atvarchar(255) values Query sequence name
qSize 3938int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 3938int(10) unsigned range Alignment end position in query
tName chr6varchar(255) values Target sequence name
tSize 170899992int(10) unsigned range Target sequence size
tStart 30964144int(10) unsigned range Alignment start position in target
tEnd 30975910int(10) unsigned range Alignment end position in target
blockCount 21int(10) unsigned range Number of blocks in alignment
blockSizes 426,103,229,148,100,187,247...longblob   Size of each block
qStarts 0,426,529,758,906,1006,1193...longblob   Start of each block in query.
tStarts 30964144,30964663,30964957,...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hg18.knownToU133Plus2.value (via affyU133Plus2.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
82137667163022187830+1007_s_at393803938chr6170899992309641443097591021426,103,229,148,100,187,247,96,152,166,111,245,128,219,235,150,226,52,437,162,117,0,426,529,758,906,1006,1193,1440,1536,1688,1854,1965,2210,2338,2557,2792,2942,3169,3221,3659,3821,30964144,30964663,30964957,30966728,30967135,30967757,30968051,30968823,30969027,30970261,30971159,30972376,30972769,30973134,30 ...
602376310163022187832+1007_s_at393803938chr6_cox_hap147316982304770231653821426,103,229,148,100,187,247,96,152,166,111,245,128,219,235,150,226,52,437,162,117,0,426,529,758,906,1006,1193,1440,1536,1688,1854,1965,2210,2338,2557,2792,2942,3169,3221,3659,3821,2304770,2305289,2305583,2307354,2307761,2308385,2308679,2309451,2309655,2310889,2311787,2313004,2313397,2313762,2314456,2315271, ...
60137597170022187832+1007_s_at393803938chr6_qbl_hap245659312103099211486721426,103,229,148,100,187,247,96,152,166,111,245,128,219,235,150,226,52,437,162,117,0,426,529,758,906,1006,1193,1440,1536,1688,1854,1965,2210,2338,2557,2792,2942,3169,3221,3659,3821,2103099,2103618,2103912,2105683,2106090,2106714,2107008,2107780,2107984,2109218,2110116,2111333,2111726,2112091,2112785,2113600, ...
1144120562160111321216-1053_at17091881616chr715882142473284025733066681527,177,50,10,190,114,81,66,158,101,102,107,42,70,132,93,121,298,348,358,548,662,743,809,967,1068,1170,1277,1319,1389,73284025,73284052,73284230,73284281,73284292,73287797,73289627,73291188,73292203,73295411,73298927,73301277,73302004,73304694,73 ...
180319248000000+117_at193201932chr124724971915976107215976300411932,0,159761072,
14522666800251658875-121_at271102679chr224295114911369140911375295819486,92,41,180,83,196,164,87,102,189,120,177,123,89,198,166,100,35,46,32,518,610,652,832,915,1111,1275,1362,1464,1653,1773,1950,2073,2162,2360,2526,2626,2665,113691409,113691896,113691990,113692031,113692212,113692296,113692493,113694139,113701202,113709441,113710648,113715596,11371605 ...
90714988143077175202+1255_g_at165601656chr61708999924224891942255770235,7,71,146,68,312,150,94,319,102,3,21,5,13,19,12,4,10,12,12,68,73,123,0,5,13,85,231,300,612,762,856,1175,1277,1280,1302,1308,1321,1340,1352,1356,1366,1378,1390,1459,1533,42248919,42248925,42248932,42249003,42249150,42249218,42253995,42254517,42254958,42255278,42255381,42255385,42255409,42255414,42 ...
96531392159011285484-1294_at330103301chr3199501827498176434982642730231,101,93,192,93,83,184,75,184,65,206,166,156,81,96,11,26,9,9,13,123,147,98,136,91,107,135,169,211,9,0,231,332,425,617,710,793,977,1052,1236,1301,1507,1673,1829,1910,2006,2017,2043,2052,2061,2075,2198,2345,2443,2579,2670,2777,291 ...49817643,49818333,49818509,49820172,49820456,49820822,49821412,49821826,49821978,49822251,49822414,49822699,49822953,49823188,49 ...
85522134510111124837+1316_at227672276chr177877474235472710354998151330,131,350,68,101,148,206,147,259,437,139,173,79,7,38,169,519,587,688,836,1042,1189,1448,1885,2024,2197,35472710,35472740,35483970,35486649,35487286,35493613,35494388,35496485,35498020,35498984,35499422,35499562,35499736,
193521400001778756-1320_at352503525chr14106368585880042338808651418129,161,235,129,222,138,1433,85,61,80,88,89,88,71,68,98,170,180,0,129,290,525,654,876,1014,2447,2532,2593,2673,2761,2850,2938,3009,3077,3175,3345,88004233,88005012,88005595,88006018,88008340,88009761,88015016,88021172,88021878,88032509,88033299,88036879,88037377,88040521,88 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.