Schema for orfeomeMrna
  Database: hg18    Primary Table: orfeomeMrna    Row Count: 34,179   Data last updated: 2018-10-16
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 781int(10) unsigned range Number of bases that match that aren't repeats
misMatches 9int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 1int(10) unsigned range Number of bases inserted in query
tNumInsert 5int(10) unsigned range Number of inserts in target
tBaseInsert 1821int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName KJ901026varchar(255) values Query sequence name
qSize 924int(10) unsigned range Query sequence size
qStart 65int(10) unsigned range Alignment start position in query
qEnd 856int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 247249719int(10) unsigned range Target sequence size
tStart 4562int(10) unsigned range Alignment start position in target
tEnd 7173int(10) unsigned range Alignment end position in target
blockCount 7int(10) unsigned range Number of blocks in alignment
blockSizes 130,69,108,44,162,199,78,longblob   Size of each block
qStarts 68,198,267,376,420,582,781,longblob   Start of each block in query.
tStarts 4562,4832,5658,5766,6469,67...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hg18.all_mrna.qName (via orfeomeMrna.qName)
      hg18.mrnaOrientInfo.name (via orfeomeMrna.qName)
      hg18.mrnaRefseq.mrna (via orfeomeMrna.qName)
      hg18.orfeomeGenes.name (via orfeomeMrna.qName)
      hgFixed.gbCdnaInfo.acc (via orfeomeMrna.qName)
      hgFixed.gbSeq.acc (via orfeomeMrna.qName)
      hgFixed.imageClone.acc (via orfeomeMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5857819001151821-KJ90102692465856chr1247249719456271737130,69,108,44,162,199,78,68,198,267,376,420,582,781,4562,4832,5658,5766,6469,6719,7095,
585256000112341-KJ90512139168325chr12472497192500225599435,62,143,16,66,101,164,307,25002,25139,25201,25583,
5879361000000+KJ8996681071681005chr12472497193575213584581937,68,357521,
5899361000000-KJ8996681071681005chr12472497196109606118971937,66,610960,
5904901000000-KJ90112662467558chr12472497197519447524351491,66,751944,
59114911005573353+KJ9050081625631560chr124724971986455086939513153,163,116,79,285,43,24,148,125,111,169,17,59,63,216,379,495,574,860,904,929,1077,1202,1313,1483,1501,864550,866386,867378,867652,867801,868086,868129,868153,868495,868940,869150,869319,869336,
5912246400001812297-KJ8986022379642314chr124724971986993788448419106,90,136,114,144,102,114,112,140,189,114,111,79,91,121,132,175,153,27,65,171,261,397,511,655,757,871,983,1123,1312,1426,1537,1616,1707,1828,1960,2135,2288,869937,870299,870760,871415,871644,873373,873732,876369,877242,877654,878417,879024,879246,881165,881337,882136,882341,884171,88 ...
59121977440001812297-AM3938432289192267chr124724971986993988448419104,90,136,114,144,102,114,112,140,189,114,111,79,91,121,132,175,153,27,22,126,216,352,466,610,712,826,938,1078,1267,1381,1492,1571,1662,1783,1915,2090,2243,869939,870299,870760,871415,871644,873373,873732,876369,877242,877654,878417,879024,879246,881165,881337,882136,882341,884171,88 ...
5911875052000112569+BC1666181990341961chr124724971988593689043212107,260,122,222,117,214,145,168,89,74,182,227,34,141,401,523,745,862,1076,1221,1389,1478,1552,1734,885936,886535,886871,887068,887597,887946,888351,888579,889162,889349,889591,890205,
59156120000175+KJ90419269365628chr12472497198868768875142117,446,65,182,886876,887068,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.