Schema for intronEst
  Database: hg38    Primary Table: intronEst    Row Count: 4,853,007   Data last updated: 2019-09-19
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 412int(10) unsigned Number of bases that match that aren't repeats
misMatches 4int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 2int(10) unsigned Number of inserts in target
tBaseInsert 1199int(10) unsigned Number of bases inserted in target
strand +char(2) + or - for strand. First character query, second target (optional)
qName AA934583varchar(255) Query sequence name
qSize 422int(10) unsigned Query sequence size
qStart 6int(10) unsigned Alignment start position in query
qEnd 422int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 248956422int(10) unsigned Target sequence size
tStart 16441int(10) unsigned Alignment start position in target
tEnd 18056int(10) unsigned Alignment end position in target
blockCount 3int(10) unsigned Number of blocks in alignment
blockSizes 188,86,142,longblob Size of each block
qStarts 6,194,280,longblob Start of each block in query.
tStarts 16441,17656,17914,longblob Start of each block in target.

Connected Tables and Joining Fields
        hg38.all_est.qName (via intronEst.qName)
      hg38.estOrientInfo.name (via intronEst.qName)
      hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5854124000021199+AA9345834226422chr124895642216441180563188,86,142,6,194,280,16441,17656,17914,
5853801320004267-AA2784124130413chr124895642216618172985150,52,11,134,66,0,150,202,213,347,16618,16856,16909,16921,17232,
58544582500057629-AA4341494813481chr12489564221669624803642,92,32,147,99,66,0,42,134,166,313,412,16696,17617,17710,17914,18267,24737,
5859500000394-AA29182695095chr12489564221674516934420,53,13,9,0,20,73,86,16745,16857,16911,16925,
5852832009194420-AA0840233429313chr12489564221698717692114,4,11,10,9,9,10,4,12,125,87,29,34,39,57,69,79,90,101,107,121,246,16987,16991,16995,17010,17020,17029,17038,17048,17230,17243,17605,
5855074004118631-AA2927296226528chr12489564221723018372119,14,22,82,102,31,20,127,35,53,16,94,103,123,145,227,332,363,384,511,547,600,17230,17241,17263,17286,17605,17711,17914,17934,18267,18302,18356,
5854764024513630-AA0574894870487chr124895642217249183611410,11,3,5,20,12,7,3,19,14,106,31,147,94,0,11,22,25,31,51,63,70,73,92,107,215,246,393,17249,17261,17273,17277,17284,17305,17318,17326,17330,17350,17602,17711,17914,18267,
585429300225617-AA4590814406440chr12489564221732318372845,99,6,31,147,42,32,30,0,45,145,151,182,329,371,404,17323,17605,17704,17711,17914,18267,18310,18342,
58541510211183213-AA0572114393439chr12489564221798418615134,8,6,9,41,9,28,10,15,15,6,117,150,0,5,14,21,31,73,82,118,129,145,161,168,286,17984,17988,17996,18002,18011,18052,18267,18300,18310,18325,18340,18346,18465,
5853382020026564-AA3106263464346chr12489564221798824894373,112,157,0,73,185,17988,18267,24737,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.