Schema for knownGenePep
  Database: hg38    Primary Table: knownGenePep    Row Count: 123,845   Data last updated: 2024-08-19
Format description: The mRNA sequence that represents each UCSC Genes transcript.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
name ENST00000641515.2varchar(255) values Name of gene
seq MKKVTAEAISWNESTSETNNSMVTEFI...longblob   mRNA sequence

Connected Tables and Joining Fields
        hg38.bioCycPathway.kgID (via knownGenePep.name)
      hg38.ccdsKgMap.geneId (via knownGenePep.name)
      hg38.ceBlastTab.query (via knownGenePep.name)
      hg38.dmBlastTab.query (via knownGenePep.name)
      hg38.drBlastTab.query (via knownGenePep.name)
      hg38.foldUtr3.name (via knownGenePep.name)
      hg38.foldUtr5.name (via knownGenePep.name)
      hg38.gnfAtlas2Distance.query (via knownGenePep.name)
      hg38.gnfAtlas2Distance.target (via knownGenePep.name)
      hg38.gnfU95Distance.query (via knownGenePep.name)
      hg38.gnfU95Distance.target (via knownGenePep.name)
      hg38.humanHprdP2P.query (via knownGenePep.name)
      hg38.humanHprdP2P.target (via knownGenePep.name)
      hg38.humanVidalP2P.query (via knownGenePep.name)
      hg38.humanVidalP2P.target (via knownGenePep.name)
      hg38.humanWankerP2P.query (via knownGenePep.name)
      hg38.humanWankerP2P.target (via knownGenePep.name)
      hg38.keggPathway.kgID (via knownGenePep.name)
      hg38.kgAlias.kgID (via knownGenePep.name)
      hg38.kgColor.kgID (via knownGenePep.name)
      hg38.kgProtAlias.kgID (via knownGenePep.name)
      hg38.kgSpAlias.kgID (via knownGenePep.name)
      hg38.kgTargetAli.qName (via knownGenePep.name)
      hg38.kgXref.kgID (via knownGenePep.name)
      hg38.knownAttrs.kgID (via knownGenePep.name)
      hg38.knownBlastTab.query (via knownGenePep.name)
      hg38.knownBlastTab.target (via knownGenePep.name)
      hg38.knownCanonical.transcript (via knownGenePep.name)
      hg38.knownCds.name (via knownGenePep.name)
      hg38.knownGene.name (via knownGenePep.name)
      hg38.knownGeneMrna.name (via knownGenePep.name)
      hg38.knownIsoforms.transcript (via knownGenePep.name)
      hg38.knownToEnsembl.name (via knownGenePep.name)
      hg38.knownToGnfAtlas2.name (via knownGenePep.name)
      hg38.knownToHprd.name (via knownGenePep.name)
      hg38.knownToKeggEntrez.name (via knownGenePep.name)
      hg38.knownToLocusLink.name (via knownGenePep.name)
      hg38.knownToLynx.name (via knownGenePep.name)
      hg38.knownToMrna.name (via knownGenePep.name)
      hg38.knownToMrnaSingle.name (via knownGenePep.name)
      hg38.knownToMupit.name (via knownGenePep.name)
      hg38.knownToNextProt.name (via knownGenePep.name)
      hg38.knownToPfam.name (via knownGenePep.name)
      hg38.knownToRefSeq.name (via knownGenePep.name)
      hg38.knownToSuper.gene (via knownGenePep.name)
      hg38.knownToTag.name (via knownGenePep.name)
      hg38.knownToU133.name (via knownGenePep.name)
      hg38.knownToU95.name (via knownGenePep.name)
      hg38.knownToVisiGene.name (via knownGenePep.name)
      hg38.knownToWikipedia.name (via knownGenePep.name)
      hg38.mmBlastTab.query (via knownGenePep.name)
      hg38.rnBlastTab.query (via knownGenePep.name)
      hg38.scBlastTab.query (via knownGenePep.name)
      hg38.ucscScop.ucscId (via knownGenePep.name)
      knownGeneV39.bioCycPathway.kgID (via knownGenePep.name)
      knownGeneV39.ceBlastTab.query (via knownGenePep.name)
      knownGeneV39.dmBlastTab.query (via knownGenePep.name)
      knownGeneV39.drBlastTab.query (via knownGenePep.name)
      knownGeneV39.foldUtr3.name (via knownGenePep.name)
      knownGeneV39.foldUtr5.name (via knownGenePep.name)
      knownGeneV39.gnfAtlas2Distance.query (via knownGenePep.name)
      knownGeneV39.gnfAtlas2Distance.target (via knownGenePep.name)
      knownGeneV39.kgAlias.kgID (via knownGenePep.name)
      knownGeneV39.kgColor.kgID (via knownGenePep.name)
      knownGeneV39.kgProtAlias.kgID (via knownGenePep.name)
      knownGeneV39.kgSpAlias.kgID (via knownGenePep.name)
      knownGeneV39.kgTargetAli.qName (via knownGenePep.name)
      knownGeneV39.kgXref.kgID (via knownGenePep.name)
      knownGeneV39.knownAttrs.kgID (via knownGenePep.name)
      knownGeneV39.knownBlastTab.query (via knownGenePep.name)
      knownGeneV39.knownBlastTab.target (via knownGenePep.name)
      knownGeneV39.knownCanonical.protein (via knownGenePep.name)
      knownGeneV39.knownCanonical.transcript (via knownGenePep.name)
      knownGeneV39.knownCds.name (via knownGenePep.name)
      knownGeneV39.knownGene.name (via knownGenePep.name)
      knownGeneV39.knownGeneMrna.name (via knownGenePep.name)
      knownGeneV39.knownGenePep.name (via knownGenePep.name)
      knownGeneV39.knownIsoforms.transcript (via knownGenePep.name)
      knownGeneV39.knownToEnsembl.name (via knownGenePep.name)
      knownGeneV39.knownToGnfAtlas2.name (via knownGenePep.name)
      knownGeneV39.knownToHprd.name (via knownGenePep.name)
      knownGeneV39.knownToLocusLink.name (via knownGenePep.name)
      knownGeneV39.knownToMrna.name (via knownGenePep.name)
      knownGeneV39.knownToMrnaSingle.name (via knownGenePep.name)
      knownGeneV39.knownToMupit.name (via knownGenePep.name)
      knownGeneV39.knownToPfam.name (via knownGenePep.name)
      knownGeneV39.knownToRefSeq.name (via knownGenePep.name)
      knownGeneV39.knownToSuper.gene (via knownGenePep.name)
      knownGeneV39.knownToTag.name (via knownGenePep.name)
      knownGeneV39.knownToU133.name (via knownGenePep.name)
      knownGeneV39.knownToU95.name (via knownGenePep.name)
      knownGeneV39.knownToVisiGene.name (via knownGenePep.name)
      knownGeneV39.knownToWikipedia.name (via knownGenePep.name)
      knownGeneV39.mmBlastTab.query (via knownGenePep.name)
      knownGeneV39.rnBlastTab.query (via knownGenePep.name)
      knownGeneV39.scBlastTab.query (via knownGenePep.name)
      knownGeneV39.ucscScop.ucscId (via knownGenePep.name)

Sample Rows
 
nameseq
ENST00000641515.2MKKVTAEAISWNESTSETNNSMVTEFIFLGLSDSQELQTFLFMLFFVFYGGIVFGNLLIVITVVSDSHLHSPMYFLLANLSLIDLSLSSVTAPKMITDFFSQRKVISFKGCLVQIFLLHFFGGSEMVI ...
ENST00000426406.4MDGENHSVVSEFLFLGLTHSWEIQLLLLVFSSVLYVASITGNILIVFSVTTDPHLHSPMYFLLASLSFIDLGACSVTSPKMIYDLFRKRKVISFGGCIAQIFFIHVVGGVEMVLLIAMAFDRYVALCK ...
ENST00000332831.5MDGENHSVVSEFLFLGLTHSWEIQLLLLVFSSVLYVASITGNILIVFSVTTDPHLHSPMYFLLASLSFIDLGACSVTSPKMIYDLFRKRKVISFGGCIAQIFFIHVVGGVEMVLLIAMAFDRYVALCK ...
ENST00000616016.5MPAVKKEFPGREDLALALATFHPTLAALPLPPLPGYLAPLPAAAALPPAASLPASAAGYEALLAPPLRPPRAYLSLHEAAPHLHLPRDPLALERFSATAAAAPDFQPLLDNGEPCIEVECGANRALLY ...
ENST00000618323.5MPAVKKEFPGREDLALALATFHPTLAALPLPPLPGYLAPLPAAAALPPAASLPASAAGYEALLAPPLRPPRAYLSLHEAAPHLHLPRDPLALERFSATAAAAPDFQPLLDNGEPCIEVECGANRALLY ...
ENST00000437963.5MSKGILQVHPPICDCPGCRISSPVNRGRLADKRTVALPAARNLKKERTPSFSASDGDSDGSGPTCGRRPGLKQEDGPHIRIMKRRVHTHWDVNISFREASCSQDGNLPT
ENST00000342066.8MSKGILQVHPPICDCPGCRISSPVNRGRLADKRTVALPAARNLKKERTPSFSASDGDSDGSGPTCGRRPGLKQEDGPHIRIMKRRVHTHWDVNISFREASCSQDGNLPTLISSVHRSRHLVMPEHQSR ...
ENST00000616125.5MSKGILQVHPPICDCPGCRISSPVNRGRLADKRTVALPAARNLKKERTPSFSASDGDSDGSGPTCGRRPGLKQEDGPHIRIMKRRVHTHWDVNISFREASCSQDGNLPTLISSVHRSRHLVMPEHQSR ...
ENST00000617307.5MSKGILQVHPPICDCPGCRISSPVNRGRLADKRTVALPAARNLKKERTPSFSASDGDSDGSGPTCGRRPGLKQEDGPHIRIMKRRVHTHWDVNISFREASCSQDGNLPTLISSVHRSRHLVMPEHQSR ...
ENST00000618181.5MSKGILQVHPPICDCPGCRISSPVNRGRLADKRTVALPAARNLKKERTPSFSASDGDSDGSGPTCGRRPGLKQEDGPHIRIMKRSQDGNLPTLISSVHRSRHLVMPEHQSRCEFQRGSLEIGLRPAGD ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.