Schema for mrnaOrientInfo
  Database: latCha1    Primary Table: mrnaOrientInfo    Row Count: 78   Data last updated: 2016-05-04
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 595smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom JH126562varchar(255) values Reference sequence chromosome or scaffold
chromStart 1354048int(10) unsigned range Start position in chromosome
chromEnd 1365182int(10) unsigned range End position in chromosome
name AY005154varchar(255) values Accession of EST
intronOrientation 7smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      latCha1.all_mrna.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
595JH12656213540481365182AY00515470000
620JH12656946276884637710AY38989150000
609JH12657032298273234915AY38994350000
607JH12657329136082922044AY38994160000
9JH12658020949072101768AY38990530000
617JH12658043185054320649KF60121631000
595JH12658714262901432502AY38992330000
588JH126592512035517999AY38992530000
593JH12659310830341097358AY38990170000
594JH12660211824551195092AY38990770000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.