Schema for xenoMrna
  Database: loxAfr3    Primary Table: xenoMrna    Row Count: 6,654,952   Data last updated: 2020-08-19
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 1149int(10) unsigned Number of bases that match that aren't repeats
misMatches 268int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 13int(10) unsigned Number of inserts in query
qBaseInsert 568int(10) unsigned Number of bases inserted in query
tNumInsert 12int(10) unsigned Number of inserts in target
tBaseInsert 568int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName JU600494varchar(255) Query sequence name
qSize 2024int(10) unsigned Query sequence size
qStart 34int(10) unsigned Alignment start position in query
qEnd 2019int(10) unsigned Alignment end position in query
tName chrMvarchar(255) Target sequence name
tSize 16866int(10) unsigned Target sequence size
tStart 1int(10) unsigned Alignment start position in target
tEnd 1986int(10) unsigned Alignment end position in target
blockCount 14int(10) unsigned Number of blocks in alignment
blockSizes 150,16,48,50,58,126,103,18,...longblob Size of each block
qStarts 34,241,258,310,374,530,723,...longblob Start of each block in query.
tStarts 14880,15085,15101,15151,152...longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)
      loxAfr3.all_mrna.qName (via xenoMrna.qName)
      loxAfr3.refGene.name (via xenoMrna.qName)
      loxAfr3.refSeqAli.qName (via xenoMrna.qName)
      loxAfr3.xenoRefFlat.name (via xenoMrna.qName)
      loxAfr3.xenoRefGene.name (via xenoMrna.qName)
      loxAfr3.xenoRefSeqAli.qName (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5851149268001356812568+-JU6004942024342019chrM168661198614150,16,48,50,58,126,103,18,18,75,90,338,261,66,34,241,258,310,374,530,723,834,913,974,1090,1220,1567,1953,14880,15085,15101,15151,15218,15377,15567,15677,15753,15815,15931,16058,16406,16799,
5854281340062926301++JU38967813503171171chrM1686671934769,14,17,18,90,249,105,317,462,484,552,687,793,1066,71,220,241,310,445,553,829,
58514829003954101++FQ2099343032274chrM1686673351557,5,13,48,54,2,102,107,141,220,73,170,177,217,297,
58514829003954101++FQ2108313892274chrM1686673351557,5,13,48,54,2,102,107,141,220,73,170,177,217,297,
58514730003954101++FQ2115223923275chrM1686673351557,5,13,48,54,3,103,108,142,221,73,170,177,217,297,
585130290021132119++FQ2118743882274chrM1686673351357,48,54,2,141,220,73,217,297,
58514829003954101++FQ2240624212274chrM1686673351557,5,13,48,54,2,102,107,141,220,73,170,177,217,297,
58514829003954101++FQ2241233871273chrM1686673351557,5,13,48,54,1,101,106,140,219,73,170,177,217,297,
58514730003954101++FQ23506915402274chrM1686673351557,5,13,48,54,2,102,107,141,220,73,170,177,217,297,
585216420031956198++FQ2119245112455chrM1686673529757,5,13,3,66,54,60,2,102,107,120,123,220,395,73,170,177,195,199,297,469,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.