Schema for mrnaOrientInfo
  Database: macEug2    Primary Table: mrnaOrientInfo    Row Count: 544   Data last updated: 2017-10-25
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom ABQO010000622varchar(255) values Reference sequence chromosome or scaffold
chromStart 3197int(10) unsigned range Start position in chromosome
chromEnd 3773int(10) unsigned range End position in chromosome
name EF602316varchar(255) values Accession of EST
intronOrientation 1smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      macEug2.all_mrna.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585ABQO01000062231973773EF60231610000
585ABQO01000738088359AY23845500000
585ABQO01001190611781343AY8564110190380
585ABQO01001190611931343AY856412070260
585ABQO010081259112821EF60231210000
585ABQO0100812591121032EF60231311000
585ABQO0100812591501032KM26958310000
585ABQO0100812591501032KM26958410000
585ABQO0100812592681032EF60231110100
585ABQO0100812597781032FJ23807902000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.