Schema for xenoRefFlat
  Database: micMur1    Primary Table: xenoRefFlat    Row Count: 681,359   Data last updated: 2020-08-22
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type description
geneName gly-9varchar(255) Name of gene as it appears in genome browser.
name NM_001382997varchar(255) Name of gene
chrom scaffold_139283varchar(255) Reference sequence chromosome or scaffold
strand -char(1) + or - for strand
txStart 426int(10) unsigned Transcription start position (or end position for minus strand item)
txEnd 546int(10) unsigned Transcription end position (or start position for minus strand item)
cdsStart 426int(10) unsigned Coding region start (or end position for minus strand item)
cdsEnd 546int(10) unsigned Coding region end (or start position for minus strand item)
exonCount 1int(10) unsigned Number of exons
exonStarts 426,longblob Exon start positions (or end positions for minus strand item)
exonEnds 546,longblob Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      micMur1.xenoRefGene.name (via xenoRefFlat.name)
      micMur1.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
gly-9NM_001382997scaffold_139283-4265464265461426,546,
dhs-9NM_065745scaffold_1392-2990102991092990102991091299010,299109,
Rhno1NM_001326586scaffold_39002+2331233162,66,144,221,247,316,64,117,219,247,289,331,
hs3st3b1aNM_001076646scaffold_250+5892486334545892486334544589248,632927,633008,633370,589409,633006,633062,633454,
stambpl1.LNM_001092813scaffold_7592+35927071359270714359,17622,18607,26966,572,17691,18736,27071,
KCNMA1NM_001322832scaffold_6186-17040175751704017414417040,17300,17405,17549,17241,17351,17509,17575,
NPEPPSNM_006310scaffold_1723+26512265932651226593126512,26593,
UbtfNM_001302954scaffold_42872+416851464168514634168,4822,4907,4745,4885,5146,
trappc9NM_001142140scaffold_1120-23980383262398038326423980,26413,37741,38197,24052,26545,38179,38326,
vash1NM_001142178scaffold_885+2650782728232650782728235265078,266330,267915,270685,272745,265165,266387,267981,271072,272823,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.