Schema for mrnaOrientInfo
  Database: mm10    Primary Table: mrnaOrientInfo    Row Count: 928,424   Data last updated: 2020-08-17
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 608smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr1varchar(255) Reference sequence chromosome or scaffold
chromStart 3073252int(10) unsigned Start position in chromosome
chromEnd 3074322int(10) unsigned End position in chromosome
name AK016604varchar(255) Accession of EST
intronOrientation 0smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 0smallint(6) Number of trailing A's on reverse strand
signalPos 0smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      mm10.all_mrna.qName (via mrnaOrientInfo.name)
      mm10.ccdsInfo.mrnaAcc (via mrnaOrientInfo.name)
      mm10.kgXref.refseq (via mrnaOrientInfo.name)
      mm10.knownToRefSeq.value (via mrnaOrientInfo.name)
      mm10.mgcFullMrna.qName (via mrnaOrientInfo.name)
      mm10.mgcGenes.name (via mrnaOrientInfo.name)
      mm10.orfeomeGenes.name (via mrnaOrientInfo.name)
      mm10.orfeomeMrna.qName (via mrnaOrientInfo.name)
      mm10.refFlat.name (via mrnaOrientInfo.name)
      mm10.refGene.name (via mrnaOrientInfo.name)
      mm10.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
608chr130732523074322AK01660400000
608chr131026813102719LF22075200000
608chr131372023137242LF22233900100
76chr131744443282340LF304952-10100
609chr131755233175992LF28848200000
609chr132059033216344AK22042810000
609chr132065223215632AK135172100240
76chr132144813671498AY5342502180410
609chr132160223216882BC16929400000
76chr132168773671349BC16929320000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.