Schema for wgEncodeGencodeUniProtVM35
  Database: mm39    Primary Table: wgEncodeGencodeUniProtVM35    Row Count: 70,377   Data last updated: 2024-05-14
Format description: GENCODE transcript to UniProt peptide mapping
On download server: MariaDB table dump directory
fieldexampleSQL type info description
transcriptId ENSMUST00000000001.5varchar(255) values GENCODE transcript identifier
acc Q9DC51varchar(255) values UniProt/Swiss-Prot accession
name Q9DC51.182varchar(255) values UniProt/Swiss-Prot entry name
dataset SwissProtenum('SwissProt', 'TrEMBL') values UniProt dataset

Connected Tables and Joining Fields
        mm39.wgEncodeGencodeAttrsVM35.transcriptId (via wgEncodeGencodeUniProtVM35.transcriptId)

Sample Rows
 
transcriptIdaccnamedataset
ENSMUST00000000001.5Q9DC51Q9DC51.182SwissProt
ENSMUST00000000003.14O08976O08976.149SwissProt
ENSMUST00000000003.14Q3UV89Q3UV89.128TrEMBL
ENSMUST00000000010.9P20615P20615.172SwissProt
ENSMUST00000000028.14Q3UI99Q3UI99.118TrEMBL
ENSMUST00000000028.14Q9Z1X9Q9Z1X9.147SwissProt
ENSMUST00000000033.12P09535P09535.186SwissProt
ENSMUST00000000049.6Q01339Q01339.176SwissProt
ENSMUST00000000058.7Q9WVC3Q9WVC3.163SwissProt
ENSMUST00000000080.8Q8BPQ2Q8BPQ2.160TrEMBL

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.