Schema for mgcFullMrna
  Database: mm7    Primary Table: mgcFullMrna    Row Count: 28,236   Data last updated: 2020-01-27
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 618smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 6594int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 3int(10) unsigned range Number of inserts in target
tBaseInsert 9300int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName BC120927varchar(255) values Query sequence name
qSize 6594int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 6594int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 194923535int(10) unsigned range Target sequence size
tStart 4339966int(10) unsigned range Alignment start position in target
tEnd 4355860int(10) unsigned range Alignment end position in target
blockCount 4int(10) unsigned range Number of blocks in alignment
blockSizes 5717,172,636,69,longblob   Size of each block
qStarts 0,5717,5889,6525,longblob   Start of each block in query.
tStarts 4339966,4347501,4347793,435...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mgcFullMrna.qName)
      hgFixed.gbSeq.acc (via mgcFullMrna.qName)
      hgFixed.imageClone.acc (via mgcFullMrna.qName)
      mm7.all_mrna.qName (via mgcFullMrna.qName)
      mm7.dupSpMrna.dupMrnaID (via mgcFullMrna.qName)
      mm7.dupSpMrna.mrnaID (via mgcFullMrna.qName)
      mm7.mgcGenes.name (via mgcFullMrna.qName)
      mm7.mrnaOrientInfo.name (via mgcFullMrna.qName)
      mm7.mrnaRefseq.mrna (via mgcFullMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
61865940000039300-BC120927659406594chr11949235354339966435586045717,172,636,69,0,5717,5889,6525,4339966,4347501,4347793,4355791,
61865940001139300-BC120928659506595chr119492353543399664355860530,5687,172,636,69,0,31,5718,5890,6526,4339966,4339996,4347501,4347793,4355791,
6191259100001431-BC1484371321321292chr1194923535448730944890002951,309,29,980,4487309,4488691,
6191259100001431-BC1530211321321292chr1194923535448730944890002951,309,29,980,4487309,4488691,
62113042581013510613-BC0213041917111901chr11949235354768802478130261306,124,166,155,115,21,16,1322,1446,1612,1767,1885,4768802,4773116,4778159,4779542,4781164,4781281,
62113007580013510613-BC027233190601890chr11949235354768802478130261306,124,166,155,115,21,16,1322,1446,1612,1767,1885,4768802,4773116,4778159,4779542,4781164,4781281,
62122775179000936412+BC0528482530102471chr11949235354803453484232610121,32,66,48,71,74,102,177,475,1295,10,131,163,229,277,348,422,524,701,1176,4803453,4804046,4824175,4825859,4827902,4832592,4834978,4836547,4840554,4841031,
62122530179000836410+BC013536244702432chr119492353548034844842326990,32,66,48,71,74,102,177,1772,0,90,122,188,236,307,381,483,660,4803484,4804046,4824175,4825859,4827902,4832592,4834978,4836547,4840554,
622240601360001037547+BC0614902576122554chr11949235354853405489349411163,63,106,88,146,57,155,147,72,838,707,12,175,238,344,432,578,635,790,937,1009,1847,4853405,4863061,4873618,4882335,4885048,4886331,4887506,4889008,4890525,4891947,4892787,
6222100500001137547+BC006022219702105chr11949235354853410489306212158,63,106,88,146,57,155,147,72,389,490,234,0,158,221,327,415,561,618,773,920,992,1381,1871,4853410,4863061,4873618,4882335,4885048,4886331,4887506,4889008,4890525,4891947,4892337,4892828,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.