Schema for knownBlastTab
  Database: mm8    Primary Table: knownBlastTab    Row Count: 5,270,545   Data last updated: 2006-03-08
Format description: Blast alignments to other proteins from this species.
On download server: MariaDB table dump directory
fieldexampleSQL type description
query AB001539varchar(255) Name of sequence in this assembly (query)
target AB001539varchar(255) Name of sequence in other assembly (target)
identity 96.86float Percent identity
aliLength 446int(10) unsigned Length of alignment
mismatch 0int(10) unsigned Number of mismatches
gapOpen 0int(10) unsigned Number of gap openings
qStart 0int(10) unsigned Start in query (0 based)
qEnd 446int(10) unsigned End in query (non-inclusive)
tStart 0int(10) unsigned Start in target (0 based)
tEnd 446int(10) unsigned End in target (non-inclusive)
eValue 0double Expectation value
bitScore 891.3double Bit score

Connected Tables and Joining Fields
        knownGeneV39.bioCycPathway.kgID (via knownBlastTab.query)
      knownGeneV39.ceBlastTab.query (via knownBlastTab.query)
      knownGeneV39.dmBlastTab.query (via knownBlastTab.query)
      knownGeneV39.drBlastTab.query (via knownBlastTab.query)
      knownGeneV39.foldUtr3.name (via knownBlastTab.query)
      knownGeneV39.foldUtr5.name (via knownBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via knownBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via knownBlastTab.query)
      knownGeneV39.kgAlias.kgID (via knownBlastTab.query)
      knownGeneV39.kgColor.kgID (via knownBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via knownBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via knownBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via knownBlastTab.query)
      knownGeneV39.kgXref.kgID (via knownBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via knownBlastTab.query)
      knownGeneV39.knownBlastTab.query (via knownBlastTab.query)
      knownGeneV39.knownBlastTab.target (via knownBlastTab.query)
      knownGeneV39.knownCanonical.protein (via knownBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via knownBlastTab.query)
      knownGeneV39.knownCds.name (via knownBlastTab.query)
      knownGeneV39.knownGene.name (via knownBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via knownBlastTab.query)
      knownGeneV39.knownGenePep.name (via knownBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via knownBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via knownBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via knownBlastTab.query)
      knownGeneV39.knownToHprd.name (via knownBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via knownBlastTab.query)
      knownGeneV39.knownToMrna.name (via knownBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via knownBlastTab.query)
      knownGeneV39.knownToMupit.name (via knownBlastTab.query)
      knownGeneV39.knownToPfam.name (via knownBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via knownBlastTab.query)
      knownGeneV39.knownToSuper.gene (via knownBlastTab.query)
      knownGeneV39.knownToTag.name (via knownBlastTab.query)
      knownGeneV39.knownToU133.name (via knownBlastTab.query)
      knownGeneV39.knownToU95.name (via knownBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via knownBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via knownBlastTab.query)
      knownGeneV39.mmBlastTab.query (via knownBlastTab.query)
      knownGeneV39.rnBlastTab.query (via knownBlastTab.query)
      knownGeneV39.scBlastTab.query (via knownBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via knownBlastTab.query)
      mm8.affyGnfU74ADistance.query (via knownBlastTab.query)
      mm8.affyGnfU74ADistance.target (via knownBlastTab.query)
      mm8.affyGnfU74BDistance.query (via knownBlastTab.query)
      mm8.affyGnfU74BDistance.target (via knownBlastTab.query)
      mm8.affyGnfU74CDistance.query (via knownBlastTab.query)
      mm8.affyGnfU74CDistance.target (via knownBlastTab.query)
      mm8.ccdsKgMap.geneId (via knownBlastTab.query)
      mm8.ceBlastTab.query (via knownBlastTab.query)
      mm8.dmBlastTab.query (via knownBlastTab.query)
      mm8.drBlastTab.query (via knownBlastTab.query)
      mm8.dupSpMrna.mrnaID (via knownBlastTab.query)
      mm8.foldUtr3.name (via knownBlastTab.query)
      mm8.foldUtr5.name (via knownBlastTab.query)
      mm8.gnfAtlas2Distance.query (via knownBlastTab.query)
      mm8.gnfAtlas2Distance.target (via knownBlastTab.query)
      mm8.hgBlastTab.query (via knownBlastTab.query)
      mm8.keggPathway.kgID (via knownBlastTab.query)
      mm8.kgAlias.kgID (via knownBlastTab.query)
      mm8.kgProtAlias.kgID (via knownBlastTab.query)
      mm8.kgSpAlias.kgID (via knownBlastTab.query)
      mm8.kgTargetAli.qName (via knownBlastTab.query)
      mm8.kgXref.kgID (via knownBlastTab.query)
      mm8.knownCanonical.transcript (via knownBlastTab.query)
      mm8.knownGene.name (via knownBlastTab.query)
      mm8.knownGeneMrna.name (via knownBlastTab.query)
      mm8.knownGenePep.name (via knownBlastTab.query)
      mm8.knownIsoforms.transcript (via knownBlastTab.query)
      mm8.knownToAllenBrain.name (via knownBlastTab.query)
      mm8.knownToEnsembl.name (via knownBlastTab.query)
      mm8.knownToGnfAtlas2.name (via knownBlastTab.query)
      mm8.knownToKeggEntrez.name (via knownBlastTab.query)
      mm8.knownToLocusLink.name (via knownBlastTab.query)
      mm8.knownToPfam.name (via knownBlastTab.query)
      mm8.knownToRefSeq.name (via knownBlastTab.query)
      mm8.knownToSuper.gene (via knownBlastTab.query)
      mm8.knownToVisiGene.name (via knownBlastTab.query)
      mm8.rnBlastTab.query (via knownBlastTab.query)
      mm8.scBlastTab.query (via knownBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
AB001539AB00153996.8644600044604460891.3
AB001539NM_15341995.613421010444603420675.6
AB001539NM_00903030.0424315381984341603931.4e-27120.9
AB001539NM_00903026.2216410731863392444050.0000000003463.16
AB001539NM_00903131.1524414991984341603935.3e-27119
AB001539NM_00903124.3916411031863392444050.00000000559.31
AB001539BC00378531.1524414991984341263595.3e-27119
AB001539BC00378524.3916411031863392103710.00000000559.31
AB001539NM_02822031.9817210752123834786410.000000000000002780.11
AB001539NM_02822029.851348542043375156410.000000008558.54

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.