Schema for xenoRefFlat
  Database: mm8    Primary Table: xenoRefFlat    Row Count: 193,643   Data last updated: 2020-08-22
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName UBE2Kvarchar(255) values Name of gene as it appears in genome browser.
name NM_001312646varchar(255) values Name of gene
chrom chr5varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 65816422int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 65878117int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 65816618int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 65874084int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 28int(10) unsigned range Number of exons
exonStarts 65816422,65816593,65845123,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 65816521,65816681,65845217,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      mm8.xenoMrna.qName (via xenoRefFlat.name)
      mm8.xenoRefGene.name (via xenoRefFlat.name)
      mm8.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
UBE2KNM_001312646chr5+658164226587811765816618658740842865816422,65816593,65845123,65850666,65873554,65874009,65874105,65874388,65874432,65874655,65874738,65874779,65875009,65875045,65 ...65816521,65816681,65845217,65850725,65873683,65874092,65874378,65874412,65874588,65874676,65874769,65874904,65875036,65875149,65 ...
SLC12A6NM_001042497chr2+11206765711216404511206766011216134643112067657,112134221,112135207,112136614,112138196,112138697,112140084,112142669,112144664,112144977,112145324,112147739,11214815 ...112067931,112134316,112135339,112136761,112138251,112138828,112140326,112142881,112144826,112145074,112145386,112147912,11214827 ...
H2AJNM_001374559chr13-21840571218409402184057121840940121840571,21840940,
H2AJNM_001374559chr13-22042648220430172204264822043017122042648,22043017,
H2AJNM_001374559chr13-22050023220503922205002322050392122050023,22050392,
H2AJNM_001374559chr13+23541375235417442354137523541744123541375,23541744,
H2AJNM_001374559chr13-23578204235785732357820423578573123578204,23578573,
H2AJNM_001374559chr13+23581935235823042358193523582304123581935,23582304,
H2AJNM_001374559chr13-23691013236913822369101323691382123691013,23691382,
LAMC1NM_002293chr1-15498113915509499915498369015509470647154981139,154981244,154981369,154981541,154981582,154981903,154982050,154982204,154982287,154982646,154982856,154982958,15498304 ...154981227,154981309,154981532,154981563,154981605,154981919,154982080,154982247,154982615,154982695,154982872,154982982,15498306 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.