Schema for mrnaOrientInfo
  Database: monDom1    Primary Table: mrnaOrientInfo    Row Count: 1,682   Data last updated: 2018-12-04
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom scaffold_10501varchar(255) values Reference sequence chromosome or scaffold
chromStart 0int(10) unsigned range Start position in chromosome
chromEnd 1992int(10) unsigned range End position in chromosome
name AF125540varchar(255) values Accession of EST
intronOrientation 5smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 26smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      monDom1.all_mrna.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585scaffold_1050101992AF125540500260
585scaffold_10501611772AF13504250000
585scaffold_10501811992AF12554150000
585scaffold_105013701985KC56079440000
585scaffold_106479901460AY05786801000
585scaffold_10658371410AF04976100000
585scaffold_10658371411AF04975400000
585scaffold_10658371411AF04975600000
585scaffold_10658371411AF04975700000
585scaffold_10658371411AF04975900000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.