Schema for xenoRefFlat
  Database: monDom5    Primary Table: xenoRefFlat    Row Count: 256,483   Data last updated: 2020-08-19
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName Fam110avarchar(255) values Name of gene as it appears in genome browser.
name NM_001014050varchar(255) values Name of gene
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 403395189int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 403396050int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 403395189int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 403396050int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 5int(10) unsigned range Number of exons
exonStarts 403395189,403395387,4033955...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 403395351,403395450,4033956...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      monDom5.xenoMrna.qName (via xenoRefFlat.name)
      monDom5.xenoRefGene.name (via xenoRefFlat.name)
      monDom5.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
Fam110aNM_001014050chr1+4033951894033960504033951894033960505403395189,403395387,403395588,403395738,403395915,403395351,403395450,403395627,403395888,403396050,
actrt2NM_001006111chr4+3880622453880630223880622453880630223388062245,388062593,388062857,388062548,388062755,388063022,
Olr446NM_001001050chr1+4249743134251949144249743134251949143424974313,424974418,425194830,424974388,424974451,425194914,
HSD3B2NM_001308637chr2+4918197224918260734918197344918260705491819722,491823303,491825257,491825603,491825821,491819812,491823408,491825533,491825743,491826073,
MstnNM_019151chr4-2070389042070444672070389042070444673207038904,207041753,207044097,207039285,207042127,207044467,
UcnNM_019150chr1-5085963365085964685085963365085964681508596336,508596468,
Matr3NM_019149chr1+33065392633067196133065410133067090127330653926,330659512,330660208,330660556,330660916,330662093,330663167,330665952,330666503,330667064,330667194,330668409,33066849 ...330655010,330659573,330660250,330660669,330660969,330662219,330663294,330666111,330666635,330667109,330667522,330668438,33066851 ...
ZNF106NM_001366845chr1-19987522219994618119987910119994615941199875222,199878550,199879074,199879953,199881182,199883495,199884485,199885188,199885712,199892543,199895572,199900062,19990006 ...199875249,199878574,199879162,199880096,199881252,199883567,199884605,199885251,199885904,199892660,199895705,199900064,19990021 ...
zgc:153675NM_001077322chr8+86461171864614568646117186461450186461171,86461456,
ZNF197NM_001323296chr6-19980605220016783519980605220016783513199806052,199806268,199831584,199918761,200030417,200084685,200084906,200116123,200116471,200151369,200151481,200151517,20016770 ...199806244,199806430,199831595,199918820,200030841,200084738,200085189,200116379,200116669,200151474,200151499,200151576,20016783 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.