Schema for estOrientInfo
  Database: musFur1    Primary Table: estOrientInfo    Row Count: 3,605   Data last updated: 2013-03-06
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 614smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom GL897080varchar(255) values Reference sequence chromosome or scaffold
chromStart 3894077int(10) unsigned range Start position in chromosome
chromEnd 3898472int(10) unsigned range End position in chromosome
name AF258318varchar(255) values Accession of EST
intronOrientation 3smallint(6) range Orientation of introns with respect to EST
sizePolyA 2smallint(6) range Number of trailing A's
revSizePolyA 3smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      musFur1.all_est.qName (via estOrientInfo.name)
      musFur1.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
614GL89708038940773898472AF25831832300
585AEYP0110896055866121GD181141001700
585AEYP011089601136313219GD18337960000
585AEYP011089601137312802GD18149750000
585AEYP0110953255816590GD18314121000
585AEYP0111063220262482GD18424500000
585AEYP011124988261674GD18355813000
585AEYP01112701269830GD18377811000
585AEYP0111296201597GD18103340000
585AEYP0111296264736GD18383220100

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.