Schema for xenoRefSeqAli
  Database: musFur1    Primary Table: xenoRefSeqAli    Row Count: 313,724   Data last updated: 2020-08-19
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 1645int(10) unsigned range Number of bases that match that aren't repeats
misMatches 153int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 2int(10) unsigned range Number of inserts in query
qBaseInsert 36int(10) unsigned range Number of bases inserted in query
tNumInsert 12int(10) unsigned range Number of inserts in target
tBaseInsert 4561int(10) unsigned range Number of bases inserted in target
strand +-char(2) values + or - for strand. First character query, second target (optional)
qName NM_001075665varchar(255) values Query sequence name
qSize 2146int(10) unsigned range Query sequence size
qStart 151int(10) unsigned range Alignment start position in query
qEnd 1985int(10) unsigned range Alignment end position in query
tName AEYP01108159varchar(255) values Target sequence name
tSize 42269int(10) unsigned range Target sequence size
tStart 14751int(10) unsigned range Alignment start position in target
tEnd 21110int(10) unsigned range Alignment end position in target
blockCount 14int(10) unsigned range Number of blocks in alignment
blockSizes 20,79,153,320,309,64,80,95,...longblob   Size of each block
qStarts 151,172,251,404,724,1033,10...longblob   Start of each block in query.
tStarts 21159,21179,21631,21802,227...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefSeqAli.qName)
      hgFixed.gbMiscDiff.acc (via xenoRefSeqAli.qName)
      hgFixed.gbSeq.acc (via xenoRefSeqAli.qName)
      hgFixed.gbWarn.acc (via xenoRefSeqAli.qName)
      hgFixed.imageClone.acc (via xenoRefSeqAli.qName)
      musFur1.all_est.qName (via xenoRefSeqAli.qName)
      musFur1.all_mrna.qName (via xenoRefSeqAli.qName)
      musFur1.refGene.name (via xenoRefSeqAli.qName)
      musFur1.refSeqAli.qName (via xenoRefSeqAli.qName)
      musFur1.xenoMrna.qName (via xenoRefSeqAli.qName)
      musFur1.xenoRefFlat.name (via xenoRefSeqAli.qName)
      musFur1.xenoRefGene.name (via xenoRefSeqAli.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585164515300236124561+-NM_00107566521461511985AEYP011081594226914751211101420,79,153,320,309,64,80,95,80,43,63,115,264,113,151,172,251,404,724,1033,1097,1177,1272,1352,1395,1458,1573,1872,21159,21179,21631,21802,22728,23155,23474,24112,24905,25078,25448,26593,27094,27405,
5851674152002107125456+-NM_001257614193721935AEYP011081594226914751220331333,76,491,309,64,80,95,80,43,63,115,264,113,2,71,147,638,947,1011,1091,1186,1266,1309,1372,1487,1822,20236,21182,21631,22728,23155,23474,24112,24905,25078,25448,26593,27094,27405,
585170915300171126015+-NM_001131194207711934AEYP011081594226914751226281370,75,491,309,64,80,95,80,43,63,115,264,113,1,71,146,637,946,1010,1090,1185,1265,1308,1371,1486,1821,19641,21183,21631,22728,23155,23474,24112,24905,25078,25448,26593,27094,27405,
751401156003238463338+-NM_001242416238001795GL89694412852284220509422699895276,834,366,42,39,0,276,1176,1551,1756,10582295,10636107,10637007,10646964,10647151,
7552125002172364349+-NM_00132013013030718GL89694412852284220509422699894276,189,42,39,0,276,474,679,10582295,10624953,10646964,10647151,
5851535212002132114568+-NM_0012711092084471926AEYP011081594226914760210751237,494,309,64,80,95,80,43,63,115,264,103,47,108,602,911,975,1055,1150,1230,1273,1336,1451,1823,21194,21628,22728,23155,23474,24112,24905,25078,25448,26593,27094,27406,
5851535212002132114568+-NM_0804792233471926AEYP011081594226914760210751237,494,309,64,80,95,80,43,63,115,264,103,47,108,602,911,975,1055,1150,1230,1273,1336,1451,1823,21194,21628,22728,23155,23474,24112,24905,25078,25448,26593,27094,27406,
5851567216003170125490+-NM_001271110211211954AEYP011081594226914760220331336,37,494,309,64,80,95,80,43,63,115,264,103,1,75,136,630,939,1003,1083,1178,1258,1301,1364,1479,1851,20236,21194,21628,22728,23155,23474,24112,24905,25078,25448,26593,27094,27406,
5851570223003172125498+-NM_001199246210741969AEYP011081594226914760220511354,37,494,309,64,80,95,80,43,63,115,255,104,4,96,157,651,960,1024,1104,1199,1279,1322,1385,1500,1865,20218,21194,21628,22728,23155,23474,24112,24905,25078,25448,26593,27094,27405,
92374836502730104154381358++NM_0078975203225203GL89689852375790205788782096437658191,157,64,56,74,69,82,142,131,127,89,66,176,182,195,82,61,15,40,30,129,43,70,165,34,4,97,42,10,19,18,10,16,46,34,88,129,93,77,4 ...22,213,370,434,490,564,633,715,857,988,1115,1204,1270,1446,1628,1823,1908,1972,1987,2071,2105,2234,2350,2420,2585,2620,2753,3070 ...20578878,20581225,20581919,20582640,20593204,20603186,20821659,20838057,20864115,20883465,20930256,20946755,20947811,20948641,20 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.