Schema for mrnaOrientInfo
  Database: nomLeu1    Primary Table: mrnaOrientInfo    Row Count: 204   Data last updated: 2020-08-22
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom ADFV01139266varchar(255) values Reference sequence chromosome or scaffold
chromStart 513int(10) unsigned range Start position in chromosome
chromEnd 10763int(10) unsigned range End position in chromosome
name KJ531793varchar(255) values Accession of EST
intronOrientation 4smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      nomLeu1.all_mrna.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585ADFV0113926651310763KJ53179340000
73GL397262605190666748JQ231129150000
90GL3972641859676818689347KJ531793200000
739GL3972642022423120241733EF55134330000
739GL3972642026396920282495EU12469850000
727GL3972651869635818699741JN966748300190
853GL3972653516417435172079HM48680670000
107GL3972693613445936277905KJ531765132000
666GL3972711065501110699810HM486777110000
10GL3972831561668015877610HM48681560000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.