Schema for estOrientInfo
  Database: ornAna2    Primary Table: estOrientInfo    Row Count: 60,610   Data last updated: 2016-01-27
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 777smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 25242003int(10) unsigned range Start position in chromosome
chromEnd 25242098int(10) unsigned range End position in chromosome
name DW586504varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 1smallint(6) range Number of trailing A's
revSizePolyA 3smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      ornAna2.all_est.qName (via estOrientInfo.name)
      ornAna2.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
777chr12524200325242098DW58650401300
777chr12524200325242098DW58673900000
611chr1034655863465808DW58714301000
611chr1034655863465808DW58729100000
632chr1862870066287179DW58697601000
632chr1862870066287179DW58724400100
600chr219855191985600DW58674900300
600chr219855441985600DW58656501000
830chr23222331932223430DW586816001200
587chr20265936266105DW58687201000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.