Schema for intronEst
  Database: oryCun2    Primary Table: intronEst    Row Count: 15,726   Data last updated: 2014-03-21
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 1243smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 720int(10) unsigned range Number of bases that match that aren't repeats
misMatches 2int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 1int(10) unsigned range Number of bases inserted in query
tNumInsert 3int(10) unsigned range Number of inserts in target
tBaseInsert 14953int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName AB072617varchar(255) values Query sequence name
qSize 723int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 723int(10) unsigned range Alignment end position in query
tName chr2varchar(255) values Target sequence name
tSize 174332312int(10) unsigned range Target sequence size
tStart 86296889int(10) unsigned range Alignment start position in target
tEnd 86312564int(10) unsigned range Alignment end position in target
blockCount 5int(10) unsigned range Number of blocks in alignment
blockSizes 157,219,158,48,140,longblob   Size of each block
qStarts 0,158,377,535,583,longblob   Start of each block in query.
tStarts 86296889,86297046,86303609,...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)
      oryCun2.all_est.qName (via intronEst.qName)
      oryCun2.estOrientInfo.name (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
124372020011314953-AB0726177230723chr217433231286296889863125645157,219,158,48,140,0,158,377,535,583,86296889,86297046,86303609,86305597,86312424,
9723343000021204+AF2471483560337chr178500846750769306507708473137,134,66,0,137,271,50769306,50770176,50770781,
5973243000012314-AF25494734922349chrUn00521958842169137316940142174,153,0,174,1691373,1693861,
8344770000057351-AF2471464770477chrX1117007753273400332741831698,64,108,68,82,57,0,98,162,270,338,420,32734003,32734296,32740143,32740524,32740770,32741774,
73415400000111674+AI0529911624158chr151090540521959276719604595287,67,4,91,19592767,19604528,
7002750000012027+AI0529893083278chr217433231215169715151720172115,160,3,118,15169715,15171857,
16232680000027788+AI0529922752270chr7173684459136118621136126677325,189,54,2,27,216,136118621,136121493,136126623,
5862278000011142-BF1462892350235chrUn0001141710722091122104892120,115,0,120,209112,210374,
8481331000011150-BI3895701340134chr11948507573452890934530193236,98,0,36,34528909,34530095,
103848970000417396-BI99358351413509chr119485075759434728594526205103,114,129,62,88,5,108,222,351,413,59434728,59437431,59438935,59449151,59452532,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.