Schema for mrnaOrientInfo
  Database: oryCun2    Primary Table: mrnaOrientInfo    Row Count: 6,493   Data last updated: 2020-08-19
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 587smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 367433int(10) unsigned range Start position in chromosome
chromEnd 372643int(10) unsigned range End position in chromosome
name L10237varchar(255) values Accession of EST
intronOrientation 6smallint(6) range Orientation of introns with respect to EST
sizePolyA 1smallint(6) range Number of trailing A's
revSizePolyA 1smallint(6) range Number of trailing A's on reverse strand
signalPos 12smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      oryCun2.all_mrna.qName (via mrnaOrientInfo.name)
      oryCun2.refFlat.name (via mrnaOrientInfo.name)
      oryCun2.refGene.name (via mrnaOrientInfo.name)
      oryCun2.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
587chr1367433372643L10237611120
598chr117047661724495Z3428590000
617chr142341354303760AF388202350000
724chr11824615818246383V0089310000
730chr11911363219114646EU4074783140390
11chr11991401919992191U5865240000
745chr12102855321086881M958152100190
884chr13924694539250077AY57054210000
957chr14884356848845965S45940180290
957chr14885117248853545S45940180290

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.