Schema for xenoMrna
  Database: oryCun2    Primary Table: xenoMrna    Row Count: 8,217,813   Data last updated: 2020-08-19
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 921int(10) unsigned Number of bases that match that aren't repeats
misMatches 136int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 2int(10) unsigned Number of inserts in query
qBaseInsert 150int(10) unsigned Number of bases inserted in query
tNumInsert 8int(10) unsigned Number of inserts in target
tBaseInsert 13115int(10) unsigned Number of bases inserted in target
strand ++char(2) + or - for strand. First character query, second target (optional)
qName AK313843varchar(255) Query sequence name
qSize 1348int(10) unsigned Query sequence size
qStart 140int(10) unsigned Alignment start position in query
qEnd 1347int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 194850757int(10) unsigned Target sequence size
tStart 15205int(10) unsigned Alignment start position in target
tEnd 29377int(10) unsigned Alignment end position in target
blockCount 9int(10) unsigned Number of blocks in alignment
blockSizes 78,123,77,145,101,68,142,16...longblob Size of each block
qStarts 140,231,491,568,713,814,882...longblob Start of each block in query.
tStarts 15205,20470,23094,23882,241...longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)
      oryCun2.all_est.qName (via xenoMrna.qName)
      oryCun2.all_mrna.qName (via xenoMrna.qName)
      oryCun2.refGene.name (via xenoMrna.qName)
      oryCun2.refSeqAli.qName (via xenoMrna.qName)
      oryCun2.xenoRefFlat.name (via xenoMrna.qName)
      oryCun2.xenoRefGene.name (via xenoMrna.qName)
      oryCun2.xenoRefSeqAli.qName (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585921136002150813115++AK31384313481401347chr11948507571520529377978,123,77,145,101,68,142,163,160,140,231,491,568,713,814,882,1024,1187,15205,20470,23094,23882,24126,25314,26223,27617,29217,
58592714200218813116++AK07489122551151202chr11948507571520529390978,123,76,145,101,68,142,163,173,115,206,334,410,555,656,724,866,1029,15205,20470,23095,23882,24126,25314,26223,27617,29217,
585931139002150813115++AK09324024031301350chr11948507571520529390978,123,77,145,101,68,142,163,173,130,221,481,558,703,804,872,1014,1177,15205,20470,23094,23882,24126,25314,26223,27617,29217,
585906132002150813147++AL83363523771181306chr11948507571520529390978,52,77,145,101,105,144,163,173,118,209,398,475,620,721,826,970,1133,15205,20470,23094,23882,24126,25314,26221,27617,29217,
585931139002150813115++AX74800724031301350chr11948507571520529390978,123,77,145,101,68,142,163,173,130,221,481,558,703,804,872,1014,1177,15205,20470,23094,23882,24126,25314,26223,27617,29217,
585929141002150813115++BC02298224151271347chr11948507571520529390978,123,77,145,101,68,142,163,173,127,218,478,555,700,801,869,1011,1174,15205,20470,23094,23882,24126,25314,26223,27617,29217,
5851160182001114521615216++BC01235231211332927chr119485075715205317631878,123,77,145,101,68,142,163,173,18,8,23,6,9,38,19,19,132,133,224,481,558,703,804,872,1014,1177,1595,1635,1648,1675,1731,1858,2166,2353,2795,15205,20470,23094,23882,24126,25314,26223,27617,29217,29580,29602,29616,29639,29678,29764,30064,30542,31631,
58586312900113777928++BC019869330611092238chr119485075720470293908123,77,145,101,68,142,163,173,1109,1369,1446,1591,1692,1760,1902,2065,20470,23094,23882,24126,25314,26223,27617,29217,
58592718900213187794++BC07928614891831430chr119485075720479293899111,135,75,145,101,68,142,165,174,183,301,436,511,656,757,825,967,1256,20479,21027,23096,23882,24126,25314,26223,27617,29215,
5855289200113455239++CU680298123818772chr119485075720485263446108,77,145,101,68,121,18,260,337,482,583,651,20485,23094,23882,24126,25314,26223,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.