Schema for mrnaOrientInfo
  Database: oryLat2    Primary Table: mrnaOrientInfo    Row Count: 2,218   Data last updated: 2020-08-19
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 587smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 297266int(10) unsigned range Start position in chromosome
chromEnd 297641int(10) unsigned range End position in chromosome
name AB435638varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      oryLat2.all_mrna.qName (via mrnaOrientInfo.name)
      oryLat2.refFlat.name (via mrnaOrientInfo.name)
      oryLat2.refGene.name (via mrnaOrientInfo.name)
      oryLat2.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
587chr1297266297641AB43563800000
592chr1970962985454EF54458470000
595chr113185741318949AB43563800000
595chr113612191361594AB43563800000
601chr121275682161308AJ63522820000
602chr122600942262333AB24827420000
604chr125051642505539AB43563800000
607chr129398842940259AB43563800000
607chr129477452948120AB43563800000
631chr160515286128161AB69319930000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.