Schema for xenoMrna
  Database: otoGar3    Primary Table: xenoMrna    Row Count: 9,368,599   Data last updated: 2020-08-19
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 308int(10) unsigned Number of bases that match that aren't repeats
misMatches 69int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 6int(10) unsigned Number of inserts in query
qBaseInsert 1163int(10) unsigned Number of bases inserted in query
tNumInsert 6int(10) unsigned Number of inserts in target
tBaseInsert 3003int(10) unsigned Number of bases inserted in target
strand +-char(2) + or - for strand. First character query, second target (optional)
qName AK123662varchar(255) Query sequence name
qSize 3389int(10) unsigned Query sequence size
qStart 24int(10) unsigned Alignment start position in query
qEnd 1564int(10) unsigned Alignment end position in query
tName AAQR03191384varchar(255) Target sequence name
tSize 22255int(10) unsigned Target sequence size
tStart 14737int(10) unsigned Alignment start position in target
tEnd 18117int(10) unsigned Alignment end position in target
blockCount 7int(10) unsigned Number of blocks in alignment
blockSizes 33,73,78,81,27,24,61,longblob Size of each block
qStarts 24,173,570,663,758,788,1503,longblob Start of each block in query.
tStarts 4138,4282,4671,4754,5445,54...longblob Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)
      otoGar3.all_mrna.qName (via xenoMrna.qName)
      otoGar3.xenoRefFlat.name (via xenoMrna.qName)
      otoGar3.xenoRefGene.name (via xenoMrna.qName)
      otoGar3.xenoRefSeqAli.qName (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58530869006116363003+-AK1236623389241564AAQR03191384222551473718117733,73,78,81,27,24,61,24,173,570,663,758,788,1503,4138,4282,4671,4754,5445,5477,7457,
5851171500399942195+-AK09320217404251556AAQR03191384222551525717584560,14,5,8,45,425,1004,1018,1033,1511,4671,6804,6821,6832,6953,
5851171500399942195+-AX74798817404251556AAQR03191384222551525717584560,14,5,8,45,425,1004,1018,1033,1511,4671,6804,6821,6832,6953,
58530852009121681230+-AK30671424813831959AAQR031913842225516643182331018,33,60,32,52,27,33,26,55,24,383,496,1048,1135,1242,1317,1479,1815,1851,1935,4022,4138,4671,4757,4868,4945,5103,5418,5444,5588,
585287490089148882+-BC03429919811611411AAQR03191384222551675417972972,17,60,52,13,20,36,27,39,161,254,559,753,1221,1241,1278,1318,1372,4283,4374,4671,4868,5309,5344,5379,5418,5462,
58559212400192703193126+-AK124550390403419AAQR031913842225516754205962324,13,4,62,12,17,10,4,7,6,5,30,45,51,50,24,33,73,36,78,81,27,24,0,24,38,124,261,357,561,571,579,588,594,618,725,806,1242,2518,2631,2780,3044,3177,3270,3365,3395,1659,1685,1698,1777,1912,2004,2173,2184,2188,2195,2203,2228,2353,2432,2847,4022,4138,4282,4536,4671,4754,5445,5477,
585192600022192207++AK0019662163493964AAQR03191384222551751217971378,105,69,493,656,895,17512,17677,17902,
585137340023002288++AK0238094415473944AAQR03191384222551751217971378,24,69,473,636,875,17512,17677,17902,
585241380074397430+-BC04486325144191137AAQR03191384222551752418233828,24,38,72,10,11,36,60,419,538,636,681,768,798,943,1077,4022,4147,4237,4283,4374,4402,4535,4671,
58527267004166451524++AK1257372515722075AAQR03191384222551752619389660,84,72,51,42,30,72,221,453,525,748,2045,17526,17677,17900,17973,18191,19359,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.