Schema for mrnaOrientInfo
  Database: oviAri3    Primary Table: mrnaOrientInfo    Row Count: 5,519   Data last updated: 2020-08-22
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 588smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 406267int(10) unsigned range Start position in chromosome
chromEnd 406888int(10) unsigned range End position in chromosome
name DQ239670varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)
      oviAri3.all_mrna.qName (via mrnaOrientInfo.name)
      oviAri3.refFlat.name (via mrnaOrientInfo.name)
      oviAri3.refGene.name (via mrnaOrientInfo.name)
      oviAri3.refSeqAli.qName (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
588chr1406267406888DQ23967000000
610chr134033603406196AF4504533160390
612chr135943243598184AF12928830000
621chr148425864843342DQ23968400000
633chr163718356372401FJ96941500000
636chr167679946787537AJ54416060000
638chr170592027069161HQ2633823230430
79chr170592027123266HQ2633843230430
79chr170592027149183HQ2633833230430
79chr170592027180174AB018477300200

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.