Schema for xenoRefFlat
  Database: oviAri4    Primary Table: xenoRefFlat    Row Count: 217,847   Data last updated: 2018-07-31
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName PDCD1varchar(255) values Name of gene as it appears in genome browser.
name NM_001314097varchar(255) values Name of gene
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 83122int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 91089int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 83151int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 91071int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 6int(10) unsigned range Number of exons
exonStarts 83122,89492,89593,90169,909...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 83228,89570,89843,90326,909...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      oviAri4.xenoRefGene.name (via xenoRefFlat.name)
      oviAri4.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
PDCD1NM_001314097chr1+83122910898315191071683122,89492,89593,90169,90954,90987,83228,89570,89843,90326,90987,91089,
PDCD1NM_001204379chr1+83132920898315191071683132,89483,90162,90936,90983,92054,83228,89844,90218,90983,91119,92089,
PDCD1NM_001114358chr1+83142910868315191071683142,89492,90285,90825,90936,90986,83226,89845,90298,90846,90986,91086,
PDCD1NM_001284136chr1+83142910868315191071683142,89491,90285,90825,90936,90986,83226,89845,90298,90846,90986,91086,
PDCD1NM_001145510chr1+83151909968315190996583151,89491,89588,90160,90954,83228,89567,89840,90326,90996,
Gal3st2NM_199366chr1-1087401102541087431102545108740,108941,109064,110013,110200,108926,109043,109508,110055,110254,
DtnaNM_207650chr23-223845992269436122391750225332424122384599,22384726,22384755,22384791,22384893,22384987,22385502,22385954,22386757,22386853,22386983,22387074,22387150,22387299,22 ...22384704,22384744,22384776,22384877,22384963,22385349,22385732,22386213,22386781,22386871,22387009,22387140,22387180,22387490,22 ...
Zfp33bNM_001346671chr5-10912949114324021091294911432402910912949,10963212,10963428,10995287,10995937,10996174,10997407,10997735,11432294,10913260,10963260,10963542,10995427,10996007,10996252,10997456,10997783,11432402,
PRKCZNM_001077833chr12-485877924868705348588085486870171948587792,48588380,48590918,48591355,48592557,48593733,48593998,48595484,48602523,48605606,48606802,48608466,48609123,48609202,48 ...48588173,48588496,48591008,48591435,48592677,48593821,48594134,48595571,48602621,48605795,48606855,48608547,48609178,48609246,48 ...
Smarcad1NM_001253392chr6-302509273034111230252636303001593130250927,30251208,30251326,30251818,30251974,30252045,30252459,30252634,30254058,30255259,30256471,30257173,30258044,30258376,30 ...30251002,30251226,30251721,30251839,30252034,30252425,30252622,30252697,30254167,30255441,30256591,30257362,30258166,30258494,30 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.