Schema for xenoRefFlat
  Database: panPan1    Primary Table: xenoRefFlat    Row Count: 492,551   Data last updated: 2020-08-22
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName ccnl1varchar(255) values Name of gene as it appears in genome browser.
name NM_001142906varchar(255) values Name of gene
chrom JH650605varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 12804880int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 12807030int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 12804883int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 12807024int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 9int(10) unsigned range Number of exons
exonStarts 12804880,12805077,12805091,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 12804976,12805080,12805193,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      panPan1.xenoRefGene.name (via xenoRefFlat.name)
      panPan1.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
ccnl1NM_001142906JH650605+12804880128070301280488312807024912804880,12805077,12805091,12805355,12805747,12805903,12806128,12806676,12806826,12804976,12805080,12805193,12805421,12805774,12805967,12806133,12806799,12807030,
BdnfNM_001285416JH650501-179246317929251792463179292521792463,1792862,1792628,1792925,
BdnfNM_001285416JH650602+119434511201109312007513120082571511943451,12007492,12007867,12008366,12008558,12008636,12008908,12008985,12009156,12009410,12010382,12010552,12010688,12010849,12 ...11943863,12007819,12008297,12008512,12008588,12008776,12008941,12009033,12009228,12009791,12010412,12010591,12010712,12010963,12 ...
CLEC7ANM_197947JH650591+1857309187226418574261870638121857309,1857930,1859576,1862630,1863886,1865662,1870505,1871181,1871400,1871849,1871955,1872048,1857522,1857936,1859676,1862769,1864037,1865781,1870879,1871353,1871530,1871886,1871985,1872264,
MICBNM_001289161JH650381-226899422690782269078226907812268994,2269078,
MICBNM_001289161JH650622-4873124998404885064998079487312,487896,488000,488310,490883,491117,491995,492557,499737,487489,487964,488243,488634,491007,491398,492154,492812,499840,
LOC440300NR_033738JH650211+20799227422274222742520799,21271,21760,21910,22545,20960,21686,21879,22505,22742,
NBAT1NR_034143JH650472-60768612106121061210360768,60919,61155,60813,60937,61210,
NBAT1NR_034143JH650480-245651124571152457115245711522456511,2457079,2456556,2457115,
NBAT1NR_034143JH650538-898495289974178997417899741778984952,8985275,8985533,8985639,8986005,8996898,8997263,8985231,8985436,8985591,8985973,8986878,8996975,8997417,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.