Schema for xenoRefFlat
  Database: panTro6    Primary Table: xenoRefFlat    Row Count: 231,421   Data last updated: 2018-07-31
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName NAA35varchar(255) values Name of gene as it appears in genome browser.
name NM_001031452varchar(255) values Name of gene
chrom chr9varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 40615458int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 40696137int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 40615458int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 40696134int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 22int(10) unsigned range Number of exons
exonStarts 40615458,40616453,40618600,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 40615520,40616528,40618733,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      panTro6.xenoMrna.qName (via xenoRefFlat.name)
      panTro6.xenoRefGene.name (via xenoRefFlat.name)
      panTro6.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
NAA35NM_001031452chr9-406154584069613740615458406961342240615458,40616453,40618600,40619036,40619862,40620773,40623535,40624289,40628357,40630826,40634615,40641696,40659869,40660806,40 ...40615520,40616528,40618733,40619173,40619929,40620885,40623714,40624388,40628424,40630934,40634674,40641875,40659984,40660890,40 ...
ECU10_1350NM_001042083chr1-352802635280269352,579,1181,1843,2455,6227,6295,7434,7928,439,768,1235,1876,2527,6243,6427,7461,8026,
CastNM_001033715chr5+744090657450791274409065745012423474409065,74462475,74462546,74464056,74469443,74471126,74474543,74474789,74475937,74479619,74480615,74481796,74487301,74487899,74 ...74409131,74462490,74462549,74464110,74469512,74471222,74474609,74474855,74475987,74479700,74480657,74481871,74487403,74487983,74 ...
Mmp8NM_008611chr11-985504209855987298550420985598721098550420,98550761,98551558,98552283,98553281,98555381,98558501,98558711,98559705,98559821,98550459,98550861,98551712,98552417,98553399,98555543,98558615,98558850,98559788,98559872,
DKFZP459J1110NM_001135450chr1-352122883521224910352,579,1170,1759,2339,2455,6196,7387,7927,12221,439,769,1235,1898,2374,2554,6425,7461,8025,12288,
NRG1NM_001159999chr8+325068313267764532506831326740881332506831,32516583,32525548,32527875,32637646,32652400,32659222,32664034,32666087,32669003,32669895,32673433,32677446,32507011,32516705,32525599,32527926,32637776,32652459,32659246,32664137,32666214,32669134,32670102,32677392,32677645,
CPSF73-IINM_001335074chr1-672802667264158672,1181,1550,1759,2339,2494,6196,7939,768,1232,1553,1898,2386,2554,6418,8026,
CPSF73-IINM_126234chr1-672802667280268672,1181,1550,1759,2339,2494,6196,7939,768,1232,1553,1898,2386,2554,6424,8026,
5.8SrRNA:CR40454NR_133544chrUn_NW_019936850v1-137714821482148211377,1482,
ing3.LNM_001086811chr7+11789249211791981011789249211791981014117892492,117892759,117894903,117897152,117909702,117911584,117912488,117912888,117913973,117914073,117914126,117915752,11791816 ...117892519,117892829,117895002,117897220,117909799,117911643,117912603,117913049,117914036,117914091,117914168,117915845,11791820 ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.