Schema for estOrientInfo
  Database: papAnu2    Primary Table: estOrientInfo    Row Count: 153,057   Data last updated: 2016-07-05
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 966smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr14varchar(255) values Reference sequence chromosome or scaffold
chromStart 50014217int(10) unsigned range Start position in chromosome
chromEnd 50016698int(10) unsigned range End position in chromosome
name CV223666varchar(255) values Accession of EST
intronOrientation 2smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      papAnu2.all_est.qName (via estOrientInfo.name)
      papAnu2.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
966chr145001421750016698CV22366620000
585AHZZ0112772448855655EY27810900000
585AHZZ0112772449185656EY27648100000
585AHZZ0112861949698023EY28598210000
585AHZZ01133409106855EY28133000000
585AHZZ011336645571298EY28381600000
585AHZZ01133666769915EY28379900000
585AHZZ01133666822984EY286429000170
585AHZZ01133666829980EY28779100000
585AHZZ01133666852979EY285467000190

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.