Schema for intronEst
  Database: papAnu4    Primary Table: intronEst    Row Count: 65,369   Data last updated: 2018-03-13
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 968smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 454int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 41int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 2int(10) unsigned range Number of inserts in target
tBaseInsert 1986int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName CV223666varchar(255) values Query sequence name
qSize 495int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 495int(10) unsigned range Alignment end position in query
tName chr14varchar(255) values Target sequence name
tSize 124513186int(10) unsigned range Target sequence size
tStart 50247300int(10) unsigned range Alignment start position in target
tEnd 50249781int(10) unsigned range Alignment end position in target
blockCount 3int(10) unsigned range Number of blocks in alignment
blockSizes 98,138,259,longblob   Size of each block
qStarts 0,98,236,longblob   Start of each block in query.
tStarts 50247300,50248432,50249522,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)
      papAnu4.all_est.qName (via intronEst.qName)
      papAnu4.estOrientInfo.name (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
96845404100021986+CV2236664950495chr141245131865024730050249781398,138,259,0,98,236,50247300,50248432,50249522,
5877141000031855-EY2762077216721chr12174588643566203591904457,93,112,53,0,457,550,662,356620,357261,357438,359137,
5874810000024135-EY2884244821482chr12174588643723043769203339,78,64,0,339,417,372304,375462,376856,
5898313000028291-EY2754188417841chr12174588646156826248073624,146,64,0,624,770,615682,620772,624743,
59388000441110+EY28589293193chr12174588641105279110547764,41,5,6,24,8,1,6,47,53,60,85,1105279,1105283,1105434,1105439,1105445,1105469,
59378520000410845+EY28941381124811chr1217458864110786311194955121,80,90,116,380,24,145,225,315,431,1107863,1108711,1109176,1118773,1119115,
5967640000052146-EY2902917728772chr1217458864144925214521626387,69,101,105,50,52,0,387,456,557,662,712,1449252,1450413,1450623,1451280,1451828,1452110,
6044852000022350+EY2755314870487chr1217458864260809326109303119,185,183,0,119,304,2608093,2610244,2610747,
62373400011311064-EY28845676025760chr1217458864501891350307115130,373,125,81,25,0,130,503,628,710,5018913,5019139,5025876,5030605,5030686,
62342900000210968-EY28781543910439chr1217458864501931450307113198,125,106,0,198,323,5019314,5025876,5030605,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.