Schema for intronEst
  Database: petMar2    Primary Table: intronEst    Row Count: 31,734   Data last updated: 2012-10-17
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 216int(10) unsigned range Number of bases that match that aren't repeats
misMatches 0int(10) unsigned range Number of bases that don't match
repMatches 18int(10) unsigned range Number of bases that match but are part of repeats
nCount 4int(10) unsigned range Number of 'N' bases
qNumInsert 3int(10) unsigned range Number of inserts in query
qBaseInsert 11int(10) unsigned range Number of bases inserted in query
tNumInsert 7int(10) unsigned range Number of inserts in target
tBaseInsert 504int(10) unsigned range Number of bases inserted in target
strand +char(2) values + or - for strand. First character query, second target (optional)
qName AA618648varchar(255) values Query sequence name
qSize 285int(10) unsigned range Query sequence size
qStart 4int(10) unsigned range Alignment start position in query
qEnd 253int(10) unsigned range Alignment end position in query
tName GL476492varchar(255) values Target sequence name
tSize 852800int(10) unsigned range Target sequence size
tStart 34290int(10) unsigned range Alignment start position in target
tEnd 35032int(10) unsigned range Alignment end position in target
blockCount 8int(10) unsigned range Number of blocks in alignment
blockSizes 14,8,8,5,20,63,109,11,longblob   Size of each block
qStarts 4,18,26,34,40,61,124,242,longblob   Start of each block in query.
tStarts 34290,34305,34314,34323,343...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)
      petMar2.all_est.qName (via intronEst.qName)
      petMar2.estOrientInfo.name (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58521601843117504+AA6186482854253GL4764928528003429035032814,8,8,5,20,63,109,11,4,18,26,34,40,61,124,242,34290,34305,34314,34323,34330,34352,34904,35021,
585163001113120+AA61864725145210GL476492852800703387062257,8,66,50,33,45,52,60,126,177,70338,70346,70355,70539,70589,
585163001113119+AA61864725145210GL476492852800810428132557,8,66,50,33,45,52,60,126,177,81042,81050,81059,81242,81292,
586124102004176+AA61864522883210GL476492852800149380149683513,9,11,68,26,83,96,105,116,184,149380,149395,149405,149417,149657,
5852451034552285-AA6186492910254GL47832750856305853311995,24,42,100,37,13,11,7,10,37,44,69,112,212,250,263,274,281,30585,30590,30614,30656,33036,33075,33089,33101,33109,
585163001113119-AA61864725145210GL488966745758826165534,49,66,8,7,41,76,125,191,199,5882,5916,6082,6149,6158,
585163001113120-AA61864725145210GL494520456229063190534,49,66,8,7,41,76,125,191,199,2906,2940,3107,3174,3183,
585169103257181-AA61864628748226GL494520456231103464824,56,60,12,7,4,6,4,61,89,145,206,218,225,229,235,3110,3136,3365,3427,3440,3448,3453,3460,
7327814500002203691-CK9885804098350GL476584617513331262371593139,99,104,59,198,297,33126,236322,237055,
7327812510002203691-CK9884167138349GL476584617513331272371593138,99,104,364,502,601,33127,236322,237055,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.