Schema for xenoRefFlat
  Database: petMar2    Primary Table: xenoRefFlat    Row Count: 133,743   Data last updated: 2020-08-22
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName CYP3A4varchar(255) values Name of gene as it appears in genome browser.
name NM_001040414varchar(255) values Name of gene
chrom GL494623varchar(255) values Reference sequence chromosome or scaffold
strand -char(1) values + or - for strand
txStart 34051int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 52863int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 34051int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 52863int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 7int(10) unsigned range Number of exons
exonStarts 34051,34284,35524,36215,396...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 34114,34416,35602,36229,396...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      petMar2.xenoRefGene.name (via xenoRefFlat.name)
      petMar2.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
CYP3A4NM_001040414GL494623-34051528633405152863734051,34284,35524,36215,39604,40773,52794,34114,34416,35602,36229,39697,40836,52863,
DMPKNM_001081560GL476486-16732404881673240488716732,18307,18436,18996,31954,32920,40410,16756,18427,18496,19090,32103,33010,40488,
HTA2NM_001203923GL476925+1938981942101938981942101193898,194210,
cpb1.SNM_001095031GL478223+5557835576015557835576014555783,556116,556573,557478,555864,556209,556621,557601,
RN18SNR_033238GL476343-9581151266997126699712669979958115,958183,958249,1265890,1266223,1266321,1266737,1266770,1266819,958162,958224,958800,1266191,1266254,1266712,1266758,1266806,1266997,
RN18SNR_033238GL476404-1580481598721598721598724158048,159609,159643,159741,159585,159631,159730,159872,
RN18SNR_033238GL485257+900410821108211082149004,9197,9245,9750,9184,9233,9707,10821,
Fen1NM_053430GL484826+429370742937074429,1139,2283,3557,567,1163,2394,3707,
Slc17a6NM_053427GL476638+59833863385983386338959833,62886,69530,71957,74885,78969,81721,82761,86182,60046,62974,69617,72091,75017,79104,81832,82890,86338,
CcsNM_053425GL478545+12291131061229113106312291,12449,13052,12396,12452,13106,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.