Schema for intronEst
  Database: petMar3    Primary Table: intronEst    Row Count: 41,301   Data last updated: 2018-03-13
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 592smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 161int(10) unsigned range Number of bases that match that aren't repeats
misMatches 5int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 3int(10) unsigned range Number of 'N' bases
qNumInsert 2int(10) unsigned range Number of inserts in query
qBaseInsert 9int(10) unsigned range Number of bases inserted in query
tNumInsert 7int(10) unsigned range Number of inserts in target
tBaseInsert 72313int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName AA618646varchar(255) values Query sequence name
qSize 287int(10) unsigned range Query sequence size
qStart 48int(10) unsigned range Alignment start position in query
qEnd 226int(10) unsigned range Alignment end position in query
tName PIZI01000020v1varchar(255) values Target sequence name
tSize 14679631int(10) unsigned range Target sequence size
tStart 957856int(10) unsigned range Alignment start position in target
tEnd 1030338int(10) unsigned range Alignment end position in target
blockCount 8int(10) unsigned range Number of blocks in alignment
blockSizes 24,52,60,12,7,4,6,4,longblob   Size of each block
qStarts 61,93,145,206,218,225,229,235,longblob   Start of each block in query.
tStarts 957856,957886,1030239,10303...longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)
      petMar3.all_est.qName (via intronEst.qName)
      petMar3.estOrientInfo.name (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
59216150329772313-AA61864628748226PIZI01000020v1146796319578561030338824,52,60,12,7,4,6,4,61,93,145,206,218,225,229,235,957856,957886,1030239,1030301,1030314,1030322,1030327,1030334,
592122102224177-AA61864522883210PIZI01000020v114679631957907958209626,27,40,9,10,13,18,44,72,112,122,132,957907,958105,958132,958173,958184,958196,
59221202144127504-AA6186482854253PIZI01000020v114679631989305990046911,41,67,63,20,5,8,8,14,32,52,94,161,225,246,251,259,267,989305,989324,989365,989921,989986,990008,990014,990023,990032,
6022442034552294+AA6186492910254PIZI01000030v11274060222497202252263910,7,11,13,37,100,44,22,5,0,10,17,28,42,79,180,225,249,2249720,2249731,2249739,2249751,2249766,2252092,2252192,2252236,2252258,
585163001113120-AA61864725145210PIZI01008436v1668813781662534,49,66,8,7,41,76,125,191,199,1378,1412,1579,1646,1655,
6124140100033478-CK9886409051416PIZI01000019v114876896359862436025174140,86,80,109,489,629,715,795,3598624,3599943,3600951,3602408,
943624710004369853+CK98851663899630PIZI01000032v11231358929166593287043584,123,125,95,104,99,183,306,431,526,2916659,3029805,3178440,3286214,3286939,
9308117501295369954-CK9886328291424PIZI01000032v11231358929166603287008678,27,75,46,99,69,405,512,539,614,660,759,2916660,2939469,2995511,3132154,3286210,3286939,
94281753011744369885-CK9885497588680PIZI01000032v11231358929166603287043575,219,51,49,104,78,153,546,597,646,2916660,3266552,3286208,3286260,3286939,
9361653011315369963+CK98856063879630PIZI01000032v11231358929166603287043683,56,60,16,101,104,79,162,218,278,425,526,2916660,3046577,3208086,3214914,3286208,3286939,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.