Schema for est
  Database: ponAbe2    Primary Table: est (chr1_est)    Row Count: 3,940   Data last updated: 2011-03-30
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 438int(10) unsigned range Number of bases that match that aren't repeats
misMatches 2int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 18int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 1int(10) unsigned range Number of bases inserted in query
tNumInsert 2int(10) unsigned range Number of inserts in target
tBaseInsert 15389int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName CR791558varchar(255) values Query sequence name
qSize 459int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 459int(10) unsigned range Alignment end position in query
tName chr1varchar(255) values Target sequence name
tSize 229942017int(10) unsigned range Target sequence size
tStart 50858int(10) unsigned range Alignment start position in target
tEnd 66705int(10) unsigned range Alignment end position in target
blockCount 4int(10) unsigned range Number of blocks in alignment
blockSizes 106,224,64,64,longblob   Size of each block
qStarts 0,107,331,395,longblob   Start of each block in query.
tStarts 50858,50964,56254,66641,longblob   Start of each block in target.

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via est.qName)
      hgFixed.gbSeq.acc (via est.qName)
      hgFixed.imageClone.acc (via est.qName)
      ponAbe2.all_est.qName (via est.qName)
      ponAbe2.estOrientInfo.name (via est.qName)
      ponAbe2.intronEst.qName (via est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585438201811215389-CR7915584590459chr122994201750858667054106,224,64,64,0,107,331,395,50858,50964,56254,66641,
5853027473112470+CR765535762402762chr1229942017117113117942452,90,189,28,402,454,544,734,117113,117294,117725,117914,
586621600111343+CR5391176291629chr1229942017146852147822341,558,28,1,42,601,146852,147236,147794,
59560435902400+CR5430266700670chr1229942017141452114151873212,188,266,0,213,404,1414521,1414733,1414921,
597451419431111+CR7502066530653chr1229942017170056917012223364,9,279,0,365,374,1700569,1700933,1700943,
597342719001122+CR6286835400540chr12299420171700761170130245,166,9,359,0,5,172,181,1700761,1700767,1700933,1700943,
600301100002922+CR788506471169471chr1229942017198930719905313128,61,113,169,297,358,1989307,1989967,1990418,
60065500000221737+CR7521796550655chr122994201720264612048853396,93,466,0,96,189,2026461,2039779,2048387,
601179034701113-CR5484765303530chr1229942017210763021081592254,272,0,255,2107630,2107887,
60168110000511908-CR7893646820682chr1229942017216109321736836111,132,151,151,108,29,0,111,243,394,545,653,2161093,2161280,2162178,2170277,2170734,2173654,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.