Schema for scBlastTab
  Database: rn3    Primary Table: scBlastTab    Row Count: 3,479   Data last updated: 2004-04-07
Format description: Blast alignments of S. cerevisiae genes
On download server: MariaDB table dump directory
fieldexampleSQL type info description
query AB000098varchar(255) values Name of sequence in this assembly (query)
target YIR019Cvarchar(255) values Name of sequence in other assembly (target)
identity 19.03float range Percent identity
aliLength 268int(10) unsigned range Length of alignment
mismatch 199int(10) unsigned range Number of mismatches
gapOpen 5int(10) unsigned range Number of gap openings
qStart 156int(10) unsigned range Start in query (0 based)
qEnd 419int(10) unsigned range End in query (non-inclusive)
tStart 376int(10) unsigned range Start in target (0 based)
tEnd 631int(10) unsigned range End in target (non-inclusive)
eValue 0.002double range Expectation value
bitScore 38.89double range Bit score

Connected Tables and Joining Fields
        knownGeneV39.bioCycPathway.kgID (via scBlastTab.query)
      knownGeneV39.ceBlastTab.query (via scBlastTab.query)
      knownGeneV39.dmBlastTab.query (via scBlastTab.query)
      knownGeneV39.drBlastTab.query (via scBlastTab.query)
      knownGeneV39.foldUtr3.name (via scBlastTab.query)
      knownGeneV39.foldUtr5.name (via scBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.query (via scBlastTab.query)
      knownGeneV39.gnfAtlas2Distance.target (via scBlastTab.query)
      knownGeneV39.kgAlias.kgID (via scBlastTab.query)
      knownGeneV39.kgColor.kgID (via scBlastTab.query)
      knownGeneV39.kgProtAlias.kgID (via scBlastTab.query)
      knownGeneV39.kgSpAlias.kgID (via scBlastTab.query)
      knownGeneV39.kgTargetAli.qName (via scBlastTab.query)
      knownGeneV39.kgXref.kgID (via scBlastTab.query)
      knownGeneV39.knownAttrs.kgID (via scBlastTab.query)
      knownGeneV39.knownBlastTab.query (via scBlastTab.query)
      knownGeneV39.knownBlastTab.target (via scBlastTab.query)
      knownGeneV39.knownCanonical.protein (via scBlastTab.query)
      knownGeneV39.knownCanonical.transcript (via scBlastTab.query)
      knownGeneV39.knownCds.name (via scBlastTab.query)
      knownGeneV39.knownGene.name (via scBlastTab.query)
      knownGeneV39.knownGeneMrna.name (via scBlastTab.query)
      knownGeneV39.knownGenePep.name (via scBlastTab.query)
      knownGeneV39.knownIsoforms.transcript (via scBlastTab.query)
      knownGeneV39.knownToEnsembl.name (via scBlastTab.query)
      knownGeneV39.knownToGnfAtlas2.name (via scBlastTab.query)
      knownGeneV39.knownToHprd.name (via scBlastTab.query)
      knownGeneV39.knownToLocusLink.name (via scBlastTab.query)
      knownGeneV39.knownToMrna.name (via scBlastTab.query)
      knownGeneV39.knownToMrnaSingle.name (via scBlastTab.query)
      knownGeneV39.knownToMupit.name (via scBlastTab.query)
      knownGeneV39.knownToPfam.name (via scBlastTab.query)
      knownGeneV39.knownToRefSeq.name (via scBlastTab.query)
      knownGeneV39.knownToSuper.gene (via scBlastTab.query)
      knownGeneV39.knownToTag.name (via scBlastTab.query)
      knownGeneV39.knownToU133.name (via scBlastTab.query)
      knownGeneV39.knownToU95.name (via scBlastTab.query)
      knownGeneV39.knownToVisiGene.name (via scBlastTab.query)
      knownGeneV39.knownToWikipedia.name (via scBlastTab.query)
      knownGeneV39.mmBlastTab.query (via scBlastTab.query)
      knownGeneV39.rnBlastTab.query (via scBlastTab.query)
      knownGeneV39.scBlastTab.query (via scBlastTab.query)
      knownGeneV39.ucscScop.ucscId (via scBlastTab.query)
      rn3.dmBlastTab.query (via scBlastTab.query)
      rn3.drBlastTab.query (via scBlastTab.query)
      rn3.dupSpMrna.mrnaID (via scBlastTab.query)
      rn3.gnfAtlas2Distance.query (via scBlastTab.query)
      rn3.gnfAtlas2Distance.target (via scBlastTab.query)
      rn3.hgBlastTab.query (via scBlastTab.query)
      rn3.keggPathway.kgID (via scBlastTab.query)
      rn3.kgAlias.kgID (via scBlastTab.query)
      rn3.kgProtAlias.kgID (via scBlastTab.query)
      rn3.kgSpAlias.kgID (via scBlastTab.query)
      rn3.kgXref.kgID (via scBlastTab.query)
      rn3.knownBlastTab.query (via scBlastTab.query)
      rn3.knownBlastTab.target (via scBlastTab.query)
      rn3.knownCanonical.transcript (via scBlastTab.query)
      rn3.knownGene.name (via scBlastTab.query)
      rn3.knownGeneLink.name (via scBlastTab.query)
      rn3.knownGeneMrna.name (via scBlastTab.query)
      rn3.knownGenePep.name (via scBlastTab.query)
      rn3.knownIsoforms.transcript (via scBlastTab.query)
      rn3.knownToEnsembl.name (via scBlastTab.query)
      rn3.knownToGnfAtlas2.name (via scBlastTab.query)
      rn3.knownToLocusLink.name (via scBlastTab.query)
      rn3.knownToPfam.name (via scBlastTab.query)
      rn3.knownToRefSeq.name (via scBlastTab.query)
      rn3.knownToSuper.gene (via scBlastTab.query)

Sample Rows
 
querytargetidentityaliLengthmismatchgapOpenqStartqEndtStarttEndeValuebitScore
AB000098YIR019C19.0326819951564193766310.00238.89
AB000113YFL055W23.8118912342414212304070.000000850.45
AB000199YGL001C27.95254143101223372540.0000000000006169.71
AB000215YNL124W24.77109644248348321320.0008540.43
AB000216YIL112W34.191176135176343264270.00000001557
AB000280YKR093W26.4333319771714882035041.7e-1992.43
AB000362YGR159C37.04815107882683490.0000000000001370.48
AB000489YBR296C40.8618610624916733745608.8e-39156.8
AB000491YGL048C76.6138991017406164052.0000000000000002e-162566.6
AB000507YFL054C36.552491525172633465921e-41164.9

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.