Schema for estOrientInfo
  Database: rn4    Primary Table: estOrientInfo    Row Count: 1,120,920   Data last updated: 2016-05-26
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 595smallint(5) unsigned Indexing field to speed chromosome range queries.
chrom chr1varchar(255) Reference sequence chromosome or scaffold
chromStart 1399705int(10) unsigned Start position in chromosome
chromEnd 1400097int(10) unsigned End position in chromosome
name AA964125varchar(255) Accession of EST
intronOrientation 0smallint(6) Orientation of introns with respect to EST
sizePolyA 0smallint(6) Number of trailing A's
revSizePolyA 0smallint(6) Number of trailing A's on reverse strand
signalPos 0smallint(6) Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)
      rn4.all_est.qName (via estOrientInfo.name)
      rn4.est.qName (via estOrientInfo.name)
      rn4.intronEst.qName (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
595chr113997051400097AA96412500000
597chr116972661697656AA96412500000
601chr121208742121265AA96412500000
602chr122375812237918AA851694000020
602chr122835292283918AA68604700000
602chr122836252284030AA68547700000
602chr122837452284327AA94366500000
602chr122837752284016AA685245000200
602chr122840722284327AA68560000000
602chr122864962286912AA9985780015038

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.