Schema for xenoRefFlat
  Database: rn4    Primary Table: xenoRefFlat    Row Count: 316,767   Data last updated: 2020-08-22
Format description: A gene prediction with additional geneName field.
On download server: MariaDB table dump directory
fieldexampleSQL type info description
geneName ZNF559-ZNF177varchar(255) values Name of gene as it appears in genome browser.
name NM_001172650varchar(255) values Name of gene
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
strand +char(1) values + or - for strand
txStart 84786641int(10) unsigned range Transcription start position (or end position for minus strand item)
txEnd 85048010int(10) unsigned range Transcription end position (or start position for minus strand item)
cdsStart 84786641int(10) unsigned range Coding region start (or end position for minus strand item)
cdsEnd 85048010int(10) unsigned range Coding region end (or start position for minus strand item)
exonCount 6int(10) unsigned range Number of exons
exonStarts 84786641,84786815,84788309,...longblob   Exon start positions (or end positions for minus strand item)
exonEnds 84786742,84786827,84788357,...longblob   Exon end positions (or start positions for minus strand item)

Connected Tables and Joining Fields
        hgFixed.gbCdnaInfo.acc (via xenoRefFlat.name)
      hgFixed.gbSeq.acc (via xenoRefFlat.name)
      hgFixed.imageClone.acc (via xenoRefFlat.name)
      rn4.xenoMrna.qName (via xenoRefFlat.name)
      rn4.xenoRefGene.name (via xenoRefFlat.name)
      rn4.xenoRefSeqAli.qName (via xenoRefFlat.name)

Sample Rows
 
geneNamenamechromstrandtxStarttxEndcdsStartcdsEndexonCountexonStartsexonEnds
ZNF559-ZNF177NM_001172650chr1+84786641850480108478664185048010684786641,84786815,84788309,84804920,84805184,85047866,84786742,84786827,84788357,84805064,84805232,85048010,
ZNF559-ZNF177NM_001172650chr1-1868985771868992551868985771868992552186898577,186899052,186898968,186899255,
KIFAP3NM_001035329chr13+795441787967262879544350796725442279544178,79544308,79547294,79551607,79553546,79554806,79559415,79560851,79562912,79570956,79575248,79601537,79608880,79610283,79 ...79544281,79544382,79547425,79551762,79553602,79554948,79559507,79560982,79563011,79571135,79575409,79601640,79608989,79610396,79 ...
CTSANM_001035326chr3+15586629915587199715586652515587164816155866299,155866525,155866793,155867168,155867307,155867618,155868062,155868824,155869384,155869586,155869742,155870416,15587104 ...155866326,155866680,155866905,155867219,155867394,155867774,155868154,155868909,155869465,155869643,155869879,155870490,15587113 ...
ZNF345NM_001035327chr1-1868986491868996631868986491868996634186898649,186899009,186899204,186899630,186898925,186899180,186899294,186899663,
ZNF345NM_001035327chr1+84788207850480108478820785048010784788207,84788717,84804920,84805172,84805745,84897896,85047732,84788357,84788777,84804980,84805325,84805775,84897939,85048010,
ZNF345NM_001035327chr1+84788204848979538478820484897953584788204,84788702,84805184,84805660,84897904,84788357,84788777,84805232,84805759,84897953,
ZNF345NM_001035327chr1+84788204848420888478820484842088684788204,84788702,84805004,84805184,84805661,84842043,84788357,84788777,84805016,84805241,84805775,84842088,
TMEM14CNM_001035437chr17-29703250297071722970325029707158429703250,29705926,29706556,29707139,29703344,29706020,29706632,29707172,
MRPL38NM_001035489chr10-10623884210624556110623884510624548810106238842,106239154,106239489,106241329,106241490,106241910,106242194,106245165,106245467,106245547,106238984,106239289,106239647,106241376,106241563,106242121,106242328,106245334,106245498,106245561,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.